Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0079 ATGGCTGAACCTTCCAAGGTCATACATGTTCGAAATGTGGGGCAGGAGATATCTGAAAATGATTTGCTTCAGCTATTTCAGTCTTTTGGAGTCATAACAAAACTAGTAATGCTGCGAGCAAAAAACCAGGCTCTTATCCAAATGCAAGATGTTGCTACTGCAGTTAGTGCTTTACAATTTTATGAAAATGTTCAGCCAAACATAAGGGGAAGGAATGTTTATGTCCAGTTTTCCTCACATCAGGAACTCGCACCAATGGATCAAAATCAAGGACGAGCAGATGAGCCAAACCGAATTCTCTTAGTTACAATTCATCACGTGCTGTATCCTATGACAGTGGATGTGCTACATCGAGTATTTTCTCCCCATGGATCTGTGGAGAAGATTGTAACATTTCAGAAGTCAGCTGGCTGTCAGGCTCTCATTCAGTATCAATCACGTCAGAGTGCTGTTACTGCGAAAAATGCACTCCAGGGACGCAATGTTTATGATGGTTGCTGTCAGCTGGACATTCAGTTCTCAAACCTTGATGAATTACAAGTGAACTACAATAATGACCGTTCAAGAGACTTCACAAACCCAAATCTTCCTGCTGAGCAGAAAGGCAGACCTTCACAAATGGGCAATGCTGATGCTATTACAGCTGCTTTTGGGGGAAATTTGCCTCCTGGCATAACTGGGGAAAATGAAAGGTGTACTATTCTTGTCTCAAATCTGAACCCCGATAGAATAGATGAGGATAAATTGTTCAACTTGTTCTCCATTTATGGGAACATTGTGAGAATTAAACTTCTCCGGAACAAACCAGATCATGCACTTGTCCAGATGGGAGATGGTTTCCAAGCTGAGTTGGCAGTACACTTTCTGAAGGGAGCATTGTTATTTGGGAAACAATTAGAGGTGAACTACTCGAAGCACGCAACCATACTCCAAGGTGCTGATACGCGCGAGTATGTCAACTCAAACCTAAATCGTTTCAATCGTAATGCTGCAAAGAATTACCGATACTGCTGCTCTCCAACGTGGGTGATCCATTTGTCCAGTCTCCCACAAGACATAACTGAGGAGGATATGGTGAACCTAGTAGAGGACCATGGAACCATTCTGAACTGCAAGGTCTTCGAAATGAATGGAAAAAAGCAGGCTTTTGTTCAGTTCGAGACTGAAGAGCAGGCAACTGAAGCTCTTGTGTGCAAGCACGCGACCTCAATTTCCGGCTCAGTAGTCCGGATCTCCTTCTCCCAGCTCCAGAACATATGA 1260 0.4341 MAEPSKVIHVRNVGQEISENDLLQLFQSFGVITKLVMLRAKNQALIQMQDVATAVSALQFYENVQPNIRGRNVYVQFSSHQELAPMDQNQGRADEPNRILLVTIHHVLYPMTVDVLHRVFSPHGSVEKIVTFQKSAGCQALIQYQSRQSAVTAKNALQGRNVYDGCCQLDIQFSNLDELQVNYNNDRSRDFTNPNLPAEQKGRPSQMGNADAITAAFGGNLPPGITGENERCTILVSNLNPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALVQMGDGFQAELAVHFLKGALLFGKQLEVNYSKHATILQGADTREYVNSNLNRFNRNAAKNYRYCCSPTWVIHLSSLPQDITEEDMVNLVEDHGTILNCKVFEMNGKKQAFVQFETEEQATEALVCKHATSISGSVVRISFSQLQNI 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0079 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 59 IPR000504 GO:0003723
Lal24g0079 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 347 409 IPR000504 GO:0003723
Lal24g0079 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 232 306 IPR000504 GO:0003723
Lal24g0079 419 SMART rrm1_1 343 412 IPR000504 GO:0003723
Lal24g0079 419 SMART rrm1_1 7 76 IPR000504 GO:0003723
Lal24g0079 419 SMART rrm1_1 233 302 IPR000504 GO:0003723
Lal24g0079 419 SMART rrm1_1 101 170 IPR000504 GO:0003723
Lal24g0079 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 80 IPR000504 GO:0003723
Lal24g0079 419 Pfam RRM-like domain 97 174 IPR021790 -
Lal24g0079 419 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 1 418 - -
Lal24g0079 419 MobiDBLite consensus disorder prediction 186 202 - -
Lal24g0079 419 Gene3D - 322 418 IPR012677 -
Lal24g0079 419 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 342 416 IPR000504 GO:0003723
Lal24g0079 419 Gene3D - 1 96 IPR012677 -
Lal24g0079 419 Gene3D - 97 201 IPR012677 -
Lal24g0079 419 MobiDBLite consensus disorder prediction 186 206 - -
Lal24g0079 419 SUPERFAMILY RNA-binding domain, RBD 3 91 IPR035979 GO:0003676
Lal24g0079 419 CDD RRM4_PTBPH3 335 413 - -
Lal24g0079 419 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 311 - -
Lal24g0079 419 SUPERFAMILY RNA-binding domain, RBD 230 415 IPR035979 GO:0003676
Lal24g0079 419 SUPERFAMILY RNA-binding domain, RBD 95 197 IPR035979 GO:0003676
Lal24g0079 419 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 418 - -
Lal24g0079 419 Gene3D - 226 321 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0079 Lal-Chr24 508069 514324 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0079 233 406 Eukaryotic Initiation Factors Gene Family AT3G16380 25.414 1.05e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0079 K14948 - gmx:100798234 732.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0079 24 508069 514324 Lal24g0079 24 508069 514324 ECH
Lal12g0095 12 643263 649568 Lal24g0079 24 508069 514324 LSH
Lal13g0074 13 493045 499466 Lal24g0079 24 508069 514324 LSH
Lal9g0874 9 6553234 6560923 Lal24g0079 24 508069 514324 PCT
Lal24g0079 24 508069 514324 Lal9g0874 9 6553234 6560923 PCT