Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0068 ATGGAAGATCTTGTTAGCTACGGTAATGTCGACGGTGACAACCACCAGGCATTGGTTGCTTTGAAAAAGGGTGCTCAACTGTTTAAATATGGTCGTAAGGGAAAGCCCAAGTCTTGTACATTTAGACTTTCCAATGATGAATCATCTTTAATCTGGATTTCAAGTAGTGAAGAAAGAAGTCTTAAGCTATCTTCTGTCTCCAGAATTATTCCCGGACAAAGAACTGCTGTTTTCCAACGTTATCTGTGGCCTGAGAAGGACCATTTATCTTTTTCACTTATTTATAACAACGGGAAGCGATCCCTTGACTTGATTTGCAAAGATAAAGTTGAGGCAGACGCGTGGATTGTTGGTCTCAAAACACTAATATCTTCTGGTCAAGGTGGGAAGCCCAAAATTGAGGGATGGAGTGATGGGGGCTTATATCTTGATGGTAATACAGATTTAACATCGAACAGTATTAGTGAAAGTTCAGCTAGTGCTTCGCGAGACATCAGTTATCCCGACATTTCTATGAGTCTACCAAATACTTCTCCAAAGTCCTTTCCACCTGAGAATGCCTTAAATTTTGAAAGGTCACATGCACCAGCAAACCCAACAAATATGCAAGTAAAAGGTTCTAGTTCAGGTGTTTTTCGTGTTAGTATGTCAAGTTCTCACAGCACATCAAGTCATGGCTCTGCACCAGATGGTTACGATGCTCTTGGGAATGTATACATATGGGGGGAGGTTATATGTGAGAACATTGTGAGAGCCGGTGCTGATAAAAGTGTCATTAATGTCAGCCCGAAGGAAGATGTTCTCCTCCCCCGGCTACTGGAGTCCAATGTGGTTTTAGATGTACTTCGAATAGCATGTGGTGTTAAGCATACCGCTCTAGTCACAAGGCAGGGTGAAGTTTTTACATGGGGTGAAGAATCTGGAGGATGCCTTGGCCATGGTGTTGGGCAGAATGTAATTCAACCTCATCTAGTTGAAGCACTGGCTTCTTCAACTGTTAATTCTGTTTCCTGTGGGGAGTTCCATACCTGTGCTGTTACAATGGACGGCGAACTTTATACATGGGGTGATGGTACTCATAATGTTGGGCTTCTTGGCCATGGCACTGATGTTAGTCATTGGATACCACAAAGAATTGCAGGTCCACTAGAGGGGCTTCACATTGCTTTAGTAACTTGTGGTCCATGGCACACCGCCTTGATAACTTCAACCGGACAGCTTTTTACATTTGGTGATGGAACCTTTGGTGTTCTGGGCCATGGAGATAGGGAAAATGTTTCATATCCTAGAGAAGTTGAATCTTTATCTGGGCTGAGGACAATAGCTGTTGCATGTGGAGTGTGGCATACTGCAGCTATTGTACAGGTTATTGTGACACAACCCAGTGCAAGTATATCATCAGGTAAATTGTTTACATGGGGCGATGGTGATAAAAATCGCCTGGGACAAGGAGATAAGGAGGCCCAGCTTGGACCAACTTGTGTGCCTTCACTCATCGATTACAATTTTTATAAAGTTGCTTGTGGGCACAATTTGACAGTAGGCCTGACTACATCTGGACGCGTCTTTACAATGGGGAGCACTGCCTACGGTCAGCTTGGGAATCCCCAGTCTGATGGAAAGCTGCCTTGTTTGGTTGAAGACAAGCTTGCTGAAGAATGCGTTGAAGAAATTGCATGTGGAGCATATCATGTTGCTATTTTAACATCCAAAAATGAAGTTTACACTTGGGGGAAGGGTGCAAATGGAAGATTGGGTCATGAGGATGTTGAAGATCGAAAAACACCAACTTTGGTTGAAGCTCTGAAGGATAGACATGTGAAATACATTGCATGCGGTTCAAACTACTCTGCTGCAATATGCCTTCATAAGTGGGTATCTACTTCTGAGCAGTCTCAGTGCTCCACTTGTAAACAGGCATTTGGGTTCACTAGAAAAAGGCGCAACTGTTATAATTGCAGACTTGTTCACTGTCATTCTTGTACTTCAAAGAAAGCATTAAGAGCAGCCCTTGCTCCTAATCCCATGAAGCTATATCGTGTTTGTGATTCTTGTTATGCAATGTTGAACAAGGTTGCAGAAGCTAGCAATATTAATGGGAGAAATACTATGCCTCATTTGTCGGGTGAAAACAAGGACAGGTTAGACAAGTCTGAGCTAAGATTGGCCAAGTTAGAAGTTCCTTCTGTTTTGAATTTGTTAAAGCAACTAGATTCTAAAGCAGCCAAACAGGGGAAGAAGGCTGATACGGTTCAGACCACACAAACACCTTCGCTAAAGCTGAAAGATGTTGTCTTCTCTAATGATCTAAAAAGAACAGTCTCAAGACCTGTTCTTACATCATCTAGTGTGAGCTCCAGGTCTGGGTCCCCTCTCTCTAGAAGACCAAGCCCCCCTCATTCAGCCACACCTATTCCAAAAACATCTGGACTTTCCTTCTCAAAAAATATTACTAATAGTTTGAAGAAAACAAATGAGCTTTTAAGTCAGGAACTTCTGAAATCATGTTCTCAGGTTGAAACCCTAAGGCAGAGATGTGAACTTCACGAATTAGAGATTCAAAAGTCAGCAAGAAAGACTCAGGAAGCTATGGCATTGGCTGCTGAGGAATCTAGGGCTGCAAAAGAAGTCATAAAGTCACTTGCAGCACAGCTGAAATATCTGACTGAGAGGCTTCCTCCCGGTTATGATGTTGAGAAGATCAGACCAACTTACCAGACAAAGGGTCTGGAGCCAAACACCATCCATTATCCGGACTCAAATGGGGAGCACCATGCCAGGGCAGAGTCGATCAATGGCTCTAGTTTGGCTTCCATGGGGCTTTTGATCTCTAATTGGAAACACAATTACCCTGATGCTAAATTGCCGTATGGCAGTGGTATGATTCAGGCAAGAGGCAGTAGCATGTCAGATACTACTGTTGATGGTATGGATTCTATGAATTTCGAAGAGTATGAGAGCAGTTTGACATCAAGGAACTCTGATAGTAGTCAAATTGAGGCAGAATGGATTGAGCAGTATGAACCTGGTGTCTATATAACACTCACTGCTCTGAGGGATGGAACCCGTGATCTAAAGGGAGTGCGCTTTAGTCAAAGAAGATTTGGAGAGCACCAAGCAGAGAGTTGGTGGTCAAAGAATCGGGACAAGGTATATGACAGGTACAATGTTCATAACCCAGAATAG 3186 0.4309 MEDLVSYGNVDGDNHQALVALKKGAQLFKYGRKGKPKSCTFRLSNDESSLIWISSSEERSLKLSSVSRIIPGQRTAVFQRYLWPEKDHLSFSLIYNNGKRSLDLICKDKVEADAWIVGLKTLISSGQGGKPKIEGWSDGGLYLDGNTDLTSNSISESSASASRDISYPDISMSLPNTSPKSFPPENALNFERSHAPANPTNMQVKGSSSGVFRVSMSSSHSTSSHGSAPDGYDALGNVYIWGEVICENIVRAGADKSVINVSPKEDVLLPRLLESNVVLDVLRIACGVKHTALVTRQGEVFTWGEESGGCLGHGVGQNVIQPHLVEALASSTVNSVSCGEFHTCAVTMDGELYTWGDGTHNVGLLGHGTDVSHWIPQRIAGPLEGLHIALVTCGPWHTALITSTGQLFTFGDGTFGVLGHGDRENVSYPREVESLSGLRTIAVACGVWHTAAIVQVIVTQPSASISSGKLFTWGDGDKNRLGQGDKEAQLGPTCVPSLIDYNFYKVACGHNLTVGLTTSGRVFTMGSTAYGQLGNPQSDGKLPCLVEDKLAEECVEEIACGAYHVAILTSKNEVYTWGKGANGRLGHEDVEDRKTPTLVEALKDRHVKYIACGSNYSAAICLHKWVSTSEQSQCSTCKQAFGFTRKRRNCYNCRLVHCHSCTSKKALRAALAPNPMKLYRVCDSCYAMLNKVAEASNINGRNTMPHLSGENKDRLDKSELRLAKLEVPSVLNLLKQLDSKAAKQGKKADTVQTTQTPSLKLKDVVFSNDLKRTVSRPVLTSSSVSSRSGSPLSRRPSPPHSATPIPKTSGLSFSKNITNSLKKTNELLSQELLKSCSQVETLRQRCELHELEIQKSARKTQEAMALAAEESRAAKEVIKSLAAQLKYLTERLPPGYDVEKIRPTYQTKGLEPNTIHYPDSNGEHHARAESINGSSLASMGLLISNWKHNYPDAKLPYGSGMIQARGSSMSDTTVDGMDSMNFEEYESSLTSRNSDSSQIEAEWIEQYEPGVYITLTALRDGTRDLKGVRFSQRRFGEHQAESWWSKNRDKVYDRYNVHNPE 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0068 1061 CDD PH_PLC_plant-like 16 124 - -
Lal24g0068 1061 MobiDBLite consensus disorder prediction 777 796 - -
Lal24g0068 1061 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 284 294 IPR000408 -
Lal24g0068 1061 Gene3D - 460 634 IPR009091 -
Lal24g0068 1061 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 635 697 IPR013083 -
Lal24g0068 1061 CDD FYVE_like_SF 633 686 - -
Lal24g0068 1061 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 405 456 IPR000408 -
Lal24g0068 1061 SMART fyve_4 622 691 IPR000306 GO:0046872
Lal24g0068 1061 Pfam Pleckstrin homology domain 16 123 IPR001849 -
Lal24g0068 1061 SUPERFAMILY PH domain-like 14 123 - -
Lal24g0068 1061 MobiDBLite consensus disorder prediction 173 206 - -
Lal24g0068 1061 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 298 349 IPR000408 -
Lal24g0068 1061 ProSiteProfiles BRX domain profile. 1001 1056 IPR013591 -
Lal24g0068 1061 Gene3D - 188 459 IPR009091 -
Lal24g0068 1061 PRINTS Chromosome condensation regulator RCC1 signature 281 294 IPR000408 -
Lal24g0068 1061 PRINTS Chromosome condensation regulator RCC1 signature 300 316 IPR000408 -
Lal24g0068 1061 PRINTS Chromosome condensation regulator RCC1 signature 350 366 IPR000408 -
Lal24g0068 1061 PRINTS Chromosome condensation regulator RCC1 signature 391 407 IPR000408 -
Lal24g0068 1061 PRINTS Chromosome condensation regulator RCC1 signature 407 421 IPR000408 -
Lal24g0068 1061 PRINTS Chromosome condensation regulator RCC1 signature 509 527 IPR000408 -
Lal24g0068 1061 PRINTS Chromosome condensation regulator RCC1 signature 567 588 IPR000408 -
Lal24g0068 1061 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 443 453 IPR000408 -
Lal24g0068 1061 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 628 690 IPR017455 -
Lal24g0068 1061 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 468 519 IPR000408 -
Lal24g0068 1061 SUPERFAMILY FYVE/PHD zinc finger 624 698 IPR011011 -
Lal24g0068 1061 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 391 401 IPR000408 -
Lal24g0068 1061 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 350 404 IPR000408 -
Lal24g0068 1061 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 572 623 IPR000408 -
Lal24g0068 1061 SUPERFAMILY RCC1/BLIP-II 235 625 IPR009091 -
Lal24g0068 1061 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1056 - -
Lal24g0068 1061 MobiDBLite consensus disorder prediction 777 814 - -
Lal24g0068 1061 Coils Coil 839 859 - -
Lal24g0068 1061 Pfam Transcription factor BRX N-terminal domain 868 896 IPR027988 -
Lal24g0068 1061 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 1056 - -
Lal24g0068 1061 Pfam FYVE zinc finger 624 690 IPR000306 GO:0046872
Lal24g0068 1061 Pfam Regulator of chromosome condensation (RCC1) repeat 519 567 IPR000408 -
Lal24g0068 1061 Pfam Regulator of chromosome condensation (RCC1) repeat 298 346 IPR000408 -
Lal24g0068 1061 Pfam Regulator of chromosome condensation (RCC1) repeat 467 514 IPR000408 -
Lal24g0068 1061 Pfam Regulator of chromosome condensation (RCC1) repeat 573 620 IPR000408 -
Lal24g0068 1061 Pfam Regulator of chromosome condensation (RCC1) repeat 405 453 IPR000408 -
Lal24g0068 1061 Pfam Regulator of chromosome condensation (RCC1) repeat 349 401 IPR000408 -
Lal24g0068 1061 Gene3D - 13 129 IPR011993 -
Lal24g0068 1061 Pfam Transcription factor regulating root and shoot growth via Pin3 1000 1055 IPR013591 -
Lal24g0068 1061 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 236 297 IPR000408 -
Lal24g0068 1061 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 520 571 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0068 Lal-Chr24 416580 423368 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0068 1002 1058 Major Intrinsic Protein MIP AT1G31880 49.123 1.27e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0068 - - gmx:100811999 1594.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal12g0080 12 520981 528691 Lal24g0068 24 416580 423368 LSH
Lal13g0067 13 405904 418537 Lal24g0068 24 416580 423368 LSH
Lal2g0971 2 6535731 6543326 Lal24g0068 24 416580 423368 PCT
Lal24g0068 24 416580 423368 Lal2g0971 2 6535731 6543326 PCT