Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0060 ATGGCTTCCGATCTGGAATTGAAGGCTAAAGAGGCATTTGTGGATGATCACTACGATCTCGCCGTTGAACTTCTCACTCAGGCTATTCAACTCAGCCCCAACAACGCTCACCTCTATGCCGACCGTGCCCAAGCCAACATCAAACTCCAAAACCTCACTGAGGCTGTTGCTGATGCAAACAAGGCAATTGAGTTGAATCCTTCTCTATCAAAAGCATATTTCCGCAAAGGTACTGCATGCCTCAAGCTTGAGGAATATCAGACTGCTAAGGCAGCTTTTGAGATTGGTGCTTCATTGGCTCCTGGAGAATCAAGATTCACTAATTTGATCAAAGAATGTGATGAGCTCATTGCAGAAGAATCTGGTGCCATACATATACCAAAAAATACCGCATCACAGGATGTATCTACAGAAGATGTTCAGCCAGAGAATGATGTTCCAGAGCGGCAAGCTGTAACAGTGGCTAAACCTAAATACAGACATGAATTTTACCAGAAACCTGATGAAGTGGTTGTTACCATATTCGCAAAGGGTATCCCGCGGAACAGCATTACTGTTGACTTTGGTGAACAAATTCTAAGTGTTAGCATTAATTTCCCGGGTGAAGATATATACACCTTTCAACCTCGCTTATTTGGAAAGATCATACCTGCTAAATGCCGGTTCGAAGTTTTGTCTACCAAAATTGAAATTCGCCTTGCTAAAGCAGAACTTATTCACTGGACTTCTCTAGAATTCAGCAGAGGTGTTATAGTTCCCCAGAGGGCTAATATTTCATCAGTTGCTGGAGGTCAGAGACCTACTTATCCTTCCTCAAAACCAAAAAGAGTAGATTGGGACAAGCTGGAAGCTCAAGTTAAGAAAGAGGAGAAGGAAGAAAAACTTGATGGTGATGCAGCATTGAACAAATTTTTCCGTGAGATATATCAAGATGCAGATGAGGACACAAGAAAAGCTATGAAAAAGTCATTTGTGGAGTCCAATGGAACAGTTCTGTCTACAAACTGGAAAGAAGTTGGATCAAAGAAGGTAGAGGGAAGTCCACCAGATGGTATGGAGTTGAAGAAATGGGAACATTAA 1080 0.4204 MASDLELKAKEAFVDDHYDLAVELLTQAIQLSPNNAHLYADRAQANIKLQNLTEAVADANKAIELNPSLSKAYFRKGTACLKLEEYQTAKAAFEIGASLAPGESRFTNLIKECDELIAEESGAIHIPKNTASQDVSTEDVQPENDVPERQAVTVAKPKYRHEFYQKPDEVVVTIFAKGIPRNSITVDFGEQILSVSINFPGEDIYTFQPRLFGKIIPAKCRFEVLSTKIEIRLAKAELIHWTSLEFSRGVIVPQRANISSVAGGQRPTYPSSKPKRVDWDKLEAQVKKEEKEEKLDGDAALNKFFREIYQDADEDTRKAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMELKKWEH 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0060 359 Gene3D - 157 247 IPR008978 -
Lal24g0060 359 PANTHER PROTEIN SGT1 HOMOLOG 1 359 IPR044563 GO:0051087
Lal24g0060 359 Gene3D Tetratricopeptide repeat domain 1 125 IPR011990 GO:0005515
Lal24g0060 359 ProSiteProfiles CS domain profile. 156 245 IPR007052 -
Lal24g0060 359 PANTHER PROTEIN SGT1 HOMOLOG ISOFORM X1 1 359 - -
Lal24g0060 359 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Lal24g0060 359 Pfam SGS domain 278 357 IPR007699 -
Lal24g0060 359 Pfam CS domain 160 235 IPR007052 -
Lal24g0060 359 SUPERFAMILY HSP20-like chaperones 153 253 IPR008978 -
Lal24g0060 359 Pfam Tetratricopeptide repeat 71 94 IPR019734 GO:0005515
Lal24g0060 359 Pfam Tetratricopeptide repeat 36 68 IPR019734 GO:0005515
Lal24g0060 359 MobiDBLite consensus disorder prediction 339 359 - -
Lal24g0060 359 SUPERFAMILY TPR-like 5 112 IPR011990 GO:0005515
Lal24g0060 359 SMART tpr_5 36 69 IPR019734 GO:0005515
Lal24g0060 359 SMART tpr_5 70 103 IPR019734 GO:0005515
Lal24g0060 359 SMART tpr_5 2 35 IPR019734 GO:0005515
Lal24g0060 359 Coils Coil 42 62 - -
Lal24g0060 359 CDD p23_CS_SGT1_like 162 245 - -
Lal24g0060 359 ProSiteProfiles SGS domain profile. 268 359 IPR007699 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0060 Lal-Chr24 371305 375334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0060 1 86 U-box Gene Family AT3G07370 31.395 2.39e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0060 K12795 - gmx:100777554 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0060 24 371305 375334 Lal24g0060 24 371305 375334 ECH