LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal24g0060	ATGGCTTCCGATCTGGAATTGAAGGCTAAAGAGGCATTTGTGGATGATCACTACGATCTCGCCGTTGAACTTCTCACTCAGGCTATTCAACTCAGCCCCAACAACGCTCACCTCTATGCCGACCGTGCCCAAGCCAACATCAAACTCCAAAACCTCACTGAGGCTGTTGCTGATGCAAACAAGGCAATTGAGTTGAATCCTTCTCTATCAAAAGCATATTTCCGCAAAGGTACTGCATGCCTCAAGCTTGAGGAATATCAGACTGCTAAGGCAGCTTTTGAGATTGGTGCTTCATTGGCTCCTGGAGAATCAAGATTCACTAATTTGATCAAAGAATGTGATGAGCTCATTGCAGAAGAATCTGGTGCCATACATATACCAAAAAATACCGCATCACAGGATGTATCTACAGAAGATGTTCAGCCAGAGAATGATGTTCCAGAGCGGCAAGCTGTAACAGTGGCTAAACCTAAATACAGACATGAATTTTACCAGAAACCTGATGAAGTGGTTGTTACCATATTCGCAAAGGGTATCCCGCGGAACAGCATTACTGTTGACTTTGGTGAACAAATTCTAAGTGTTAGCATTAATTTCCCGGGTGAAGATATATACACCTTTCAACCTCGCTTATTTGGAAAGATCATACCTGCTAAATGCCGGTTCGAAGTTTTGTCTACCAAAATTGAAATTCGCCTTGCTAAAGCAGAACTTATTCACTGGACTTCTCTAGAATTCAGCAGAGGTGTTATAGTTCCCCAGAGGGCTAATATTTCATCAGTTGCTGGAGGTCAGAGACCTACTTATCCTTCCTCAAAACCAAAAAGAGTAGATTGGGACAAGCTGGAAGCTCAAGTTAAGAAAGAGGAGAAGGAAGAAAAACTTGATGGTGATGCAGCATTGAACAAATTTTTCCGTGAGATATATCAAGATGCAGATGAGGACACAAGAAAAGCTATGAAAAAGTCATTTGTGGAGTCCAATGGAACAGTTCTGTCTACAAACTGGAAAGAAGTTGGATCAAAGAAGGTAGAGGGAAGTCCACCAGATGGTATGGAGTTGAAGAAATGGGAACATTAA	1080	0.4204	MASDLELKAKEAFVDDHYDLAVELLTQAIQLSPNNAHLYADRAQANIKLQNLTEAVADANKAIELNPSLSKAYFRKGTACLKLEEYQTAKAAFEIGASLAPGESRFTNLIKECDELIAEESGAIHIPKNTASQDVSTEDVQPENDVPERQAVTVAKPKYRHEFYQKPDEVVVTIFAKGIPRNSITVDFGEQILSVSINFPGEDIYTFQPRLFGKIIPAKCRFEVLSTKIEIRLAKAELIHWTSLEFSRGVIVPQRANISSVAGGQRPTYPSSKPKRVDWDKLEAQVKKEEKEEKLDGDAALNKFFREIYQDADEDTRKAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMELKKWEH	359

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lal24g0060	359	Gene3D	-	157	247	IPR008978	-
Lal24g0060	359	PANTHER	PROTEIN SGT1 HOMOLOG	1	359	IPR044563	GO:0051087
Lal24g0060	359	Gene3D	Tetratricopeptide repeat domain	1	125	IPR011990	GO:0005515
Lal24g0060	359	ProSiteProfiles	CS domain profile.	156	245	IPR007052	-
Lal24g0060	359	PANTHER	PROTEIN SGT1 HOMOLOG ISOFORM X1	1	359	-	-
Lal24g0060	359	ProSiteProfiles	TPR repeat profile.	36	69	IPR019734	GO:0005515
Lal24g0060	359	Pfam	SGS domain	278	357	IPR007699	-
Lal24g0060	359	Pfam	CS domain	160	235	IPR007052	-
Lal24g0060	359	SUPERFAMILY	HSP20-like chaperones	153	253	IPR008978	-
Lal24g0060	359	Pfam	Tetratricopeptide repeat	71	94	IPR019734	GO:0005515

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal24g0060	Lal-Chr24	371305	375334	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal24g0060	1	86	U-box Gene Family	AT3G07370	31.395	2.39e-06	46.6

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal24g0060	K12795		-	gmx:100777554	558.525

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal24g0060	24	371305	375334	Lal24g0060	24	371305	375334	ECH

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