Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0039 ATGAGGAGCCAGCAAGGAGAAAAAGCAAAACCAAAACACAGGAAGGGGTTATGGTCACCTGAAGAAGACAATAAGCTAAGAAACCACATCCTTAATCATGGTCATGGTTGTTGGAGCTCTGTTTCCATTAAGGCAGGGTTGCAAAGGAATGGAAAGAGCTGCAGGCTAAGGTGGATTAACTACTTAAGGCCAGGACTAAAGAAAGGGATGTTCAGCAAACAGGAGGAGGAGACAATCCTGACCCTTCATAGCATGTTAGGCAATAAGTGGTCTCAGATTGCACAACATTTAGCAGGAAGGACTGATAATGAAATAAAAAACTATTGGCATTCATATCTGAAAAAGAGAGTGGCCAAAGCTAAGGAAATGGAATCTCATATTCAAATTCAGTATGCCACCTCAAACTCAGATACCTTAGACTCTTCACCCTCTTGCCAAAAACTTGCAACACAAGGCACACAGACTATAAACTTCACCAAAGAGGCAAATCAATGCACCTTACCAAAACTGTTATTTGCTGAGTGGCTTTCAGTTGATCATGTAAGTTTTGGCAACTCTACAAATTCATATGACTCTTTGAACTTAAGGAATGGGTTTGATCAAAATCAAACATTTCAGGAAGCTCCAATGCATTATTTGCCAGAAGGACCCTTTGGTGGAGGAGAGTATAATAATAATTTAACTCACATTTCAGCCACTGAAATGTTCAATTCACAGCTTAAGTTTGGAAATGAAATTGTGGCAAATGGATTCACCCATTGTATACCTGGGATTGATTTAAGTAGCAATATCAGCCTAAGCAATTATGCTATATAA 816 0.3922 MRSQQGEKAKPKHRKGLWSPEEDNKLRNHILNHGHGCWSSVSIKAGLQRNGKSCRLRWINYLRPGLKKGMFSKQEEETILTLHSMLGNKWSQIAQHLAGRTDNEIKNYWHSYLKKRVAKAKEMESHIQIQYATSNSDTLDSSPSCQKLATQGTQTINFTKEANQCTLPKLLFAEWLSVDHVSFGNSTNSYDSLNLRNGFDQNQTFQEAPMHYLPEGPFGGGEYNNNLTHISATEMFNSQLKFGNEIVANGFTHCIPGIDLSSNISLSNYAI 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0039 271 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lal24g0039 271 CDD SANT 71 113 IPR001005 -
Lal24g0039 271 CDD SANT 18 62 IPR001005 -
Lal24g0039 271 SMART sant 67 115 IPR001005 -
Lal24g0039 271 SMART sant 14 64 IPR001005 -
Lal24g0039 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Lal24g0039 271 PANTHER MYB TRANSCRIPTION FACTOR 154 266 - -
Lal24g0039 271 PANTHER MYB TRANSCRIPTION FACTOR 1 153 - -
Lal24g0039 271 PANTHER MYB DOMAIN PROTEIN 55 154 266 - -
Lal24g0039 271 PANTHER MYB DOMAIN PROTEIN 55 1 153 - -
Lal24g0039 271 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Lal24g0039 271 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Lal24g0039 271 Gene3D - 69 138 - -
Lal24g0039 271 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lal24g0039 271 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Lal24g0039 271 Gene3D - 15 67 - -
Lal24g0039 271 MobiDBLite consensus disorder prediction 1 22 - -
Lal24g0039 271 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0039 Lal-Chr24 274463 278235 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0039 3 201 MYB Transcription Factor Family AT5G52260 51.852 2.94e-63 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal24g0039 Myb_DNA-binding 1.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0039 K09422 - gmx:778167 421.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal24g0039 24 274463 278235 Lal24g0039 24 274463 278235 ECH
Lal12g0046 12 322712 325575 Lal24g0039 24 274463 278235 LSH
Lal13g0034 13 239748 243280 Lal24g0039 24 274463 278235 LSH