Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0033 ATGAGGCCTATTTTCTGTGGAAATTTTGAATATGATTCCCGAGAGTCGGAGCTGGAGCGCCTTTTTAGACGATATGGGAAGGTGGAAAGGGTGGATATGAAGTCTGGATTTGCTTTTATCTACATGGAAGATGATAGAGATGCTGAGGCTGCAATTCGTGCTCTTGACCGGATAGAATTTGGTCGGAAGGGGCGCAAACTTCGTGTGGAATGGACAAAGCAAGAACGTGGCATTAGAAGGCCCGCTCCCAGTTCAAGAAGATCTTCGGGGAATGGAAGGCCATCAAAGACCTTATTTGTAATCAATTTTGATACATACCATACCAGAACAAGGGACTTGGAGAGGCACTTTGAGCCGTATGGTAAGATAGTCAATGTGAGGATTAGAAGAAATTTTGCTTTTGTTGAGTATGAATCAGAGGATGATGCTTGCAGAGCTTTGGAAGCTACAAACATGAGCAAGTTGCTGGATCGAGTTATTTCAGTTGAATTTTCTGTTAAAGATAGTGATAGGCGAGATGGATATAGCCCCGATAGAGGCCATGTTCTACAACGCAATAGAAGTCGTGATGGAAGACGGTCACCCAGTCCTTATCGTAGAGAAAGGGGTAGTCCTGATTATGGCCGTGGACCCAGTCCATATAAGAGGGAGAGGAGCAGCCCTGACTATGGTCATGGCCGTAGCCGTAGTCGAAGTCCTCTTGGAAGGCAGCGTGCTAGCCCTGCTTATGGGCGTAGAAGTCCTAGTCCATATAGAAGAGAGAGGGATGACTCTGACCCTGTTCGTGTCTCCAGCCGCAGTCCTTATCACAAGGAGCAAGTAAGAACTGATGACCGTAGCATCTCTCCCTCCCATAAAAGTCTTGATGCCAATGAGAGAACAAGTCCTCAAAATGGTCGTGGTTCTAGCCGTAGTCCTTATGATATGGAGAAGGCGGCTAGTCCTGCAAATGGCCATGGCTTCAAACATAGTCCTGAAGAAGAAGGGGCCATCAGCCCTGACAATGGTTATGAAGGGAGCCCAAATGCTATGCCTGATAGTCCCGACCTTCAACGATGCCGCAGCCAGTCCCCCCCTGCAGAAGAATGA 1089 0.4757 MRPIFCGNFEYDSRESELERLFRRYGKVERVDMKSGFAFIYMEDDRDAEAAIRALDRIEFGRKGRKLRVEWTKQERGIRRPAPSSRRSSGNGRPSKTLFVINFDTYHTRTRDLERHFEPYGKIVNVRIRRNFAFVEYESEDDACRALEATNMSKLLDRVISVEFSVKDSDRRDGYSPDRGHVLQRNRSRDGRRSPSPYRRERGSPDYGRGPSPYKRERSSPDYGHGRSRSRSPLGRQRASPAYGRRSPSPYRRERDDSDPVRVSSRSPYHKEQVRTDDRSISPSHKSLDANERTSPQNGRGSSRSPYDMEKAASPANGHGFKHSPEEEGAISPDNGYEGSPNAMPDSPDLQRCRSQSPPAEE 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0033 362 MobiDBLite consensus disorder prediction 287 304 - -
Lal24g0033 362 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 160 IPR000504 GO:0003723
Lal24g0033 362 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 62 IPR000504 GO:0003723
Lal24g0033 362 PANTHER BNAC08G47240D PROTEIN 4 362 - -
Lal24g0033 362 MobiDBLite consensus disorder prediction 169 225 - -
Lal24g0033 362 MobiDBLite consensus disorder prediction 75 96 - -
Lal24g0033 362 Gene3D - 86 177 IPR012677 -
Lal24g0033 362 Gene3D - 1 85 IPR012677 -
Lal24g0033 362 SUPERFAMILY RNA-binding domain, RBD 80 175 IPR035979 GO:0003676
Lal24g0033 362 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Lal24g0033 362 MobiDBLite consensus disorder prediction 169 362 - -
Lal24g0033 362 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 167 IPR000504 GO:0003723
Lal24g0033 362 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 362 - -
Lal24g0033 362 SMART rrm1_1 97 163 IPR000504 GO:0003723
Lal24g0033 362 SMART rrm1_1 3 70 IPR000504 GO:0003723
Lal24g0033 362 MobiDBLite consensus disorder prediction 248 286 - -
Lal24g0033 362 SUPERFAMILY RNA-binding domain, RBD 4 94 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0033 Lal-Chr24 231177 235489 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0033 4 172 Eukaryotic Initiation Factors Gene Family AT1G49760 21.466 2.89e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0033 K12893 - gmx:100796509 518.464