Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal24g0032 ATGGATGATCAAAACCCTCACCCACCACGCCCTCCTTCTATACAAGTTCCTCAATTCTCTATCTCCTCATCATCATCAGCACCACCACCACCAACAACAACAACACCAACTTCTGCAGAGCCGAATGCTACCGTGAGGTACCGTGGAACGCGGTGCCGGAGCGGGAAATGGGTGTGTGAGATCCGTGAGCCACGTAAAACAAAGCGCATTTGGCTTGGAACATATCAAACACCTGAAATGGCTGCAGCTGCATATGATGTAGCAGCTCTAGCATTGAAGGGGCCAAACACCCCCCTCAACTTCCCCGATTCTATTCTCTCCTACCCTATTCCTAGGTCTTTATCCCCATCTGATATATGTGCTGCTGCTTCTGCTGCTGCTCAAGCTAGAATAGTGACACCCCAACAACAACAACAACAACAACAACAACAACTAGAAACTCAAAACCCTTGTGGTGGTAGTGGAATTAATGTTGAGAGTGGTTCATCAAGTGCACAAGCACCGCAAGAGTACATTGATGAAGATGAGCTTTTGAATATGCCTAATCTATTAAATGATATGGCTAGAGGAATGCAGATGATTGGTTGCTGTGTGTATATTCAACAGAAAGAAGAAGATTTGAGGATAATGACCACTTTCTCGATCATCACTGTTTTGGTGAAAGCTAGATGCCACCAATTTTAG 684 0.4518 MDDQNPHPPRPPSIQVPQFSISSSSSAPPPPTTTTPTSAEPNATVRYRGTRCRSGKWVCEIREPRKTKRIWLGTYQTPEMAAAAYDVAALALKGPNTPLNFPDSILSYPIPRSLSPSDICAAASAAAQARIVTPQQQQQQQQQQLETQNPCGGSGINVESGSSSAQAPQEYIDEDELLNMPNLLNDMARGMQMIGCCVYIQQKEEDLRIMTTFSIITVLVKARCHQF 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal24g0032 227 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 37 193 - -
Lal24g0032 227 CDD AP2 46 104 IPR001471 GO:0003700|GO:0006355
Lal24g0032 227 SUPERFAMILY DNA-binding domain 47 104 IPR016177 GO:0003677
Lal24g0032 227 ProSiteProfiles AP2/ERF domain profile. 46 102 IPR001471 GO:0003700|GO:0006355
Lal24g0032 227 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF026 37 193 - -
Lal24g0032 227 MobiDBLite consensus disorder prediction 1 43 - -
Lal24g0032 227 Pfam AP2 domain 51 94 IPR001471 GO:0003700|GO:0006355
Lal24g0032 227 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Lal24g0032 227 SMART rav1_2 46 108 IPR001471 GO:0003700|GO:0006355
Lal24g0032 227 MobiDBLite consensus disorder prediction 135 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal24g0032 Lal-Chr24 224374 225263 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal24g0032 47 193 AP2-EREBP Transcription Factor Family AT5G52020 54.422 1.39e-33 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lal24g0032 AP2 1.7e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal24g0032 - - gmx:100776717 193.741