Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1637 ATGGGTACCCAAGAATCTCTTCTAGACAAGCCTAATAAATATTTTTCCAATACTTTCTGGTTAGTCCTCTCTGTCGCTACTATCTTAAGCTCATCACTCTTTATTGCTTCTTATCTCATCATCAAACCCACCTCCTCCTACTTTAACCTATCCTCTCCTCACTATGCTTGTGAACATGCAATTGACAAAGCATCGTGCCTTGCTCATTGTTCAGAAGTAGCTGCCCAAAAACTCAATTTGCTCCAATCCATCTTAATCATATCTACTTCACACATGCACAAAGCCTTACATAACACCAACCATGTCAAACTCCGAATCAATAGTCCAAAGGAGCAAGCAGCTTTGGTTGATTGTGAGGAGTTGATGGAGTTGTCCATCAATAGAGTTTGGGACTCAATCATGGCTCTATCTAAAAATACAACTAGTTCAATACAAGATGCACATTCATGGCTAAGCAGTGTGCTCACTAACCATGCAACTTGCTTGGATGGACTAGAGGGTTCAGCTAGGGCCCTTATGGAAGCTGAGCTTGAGGACTTGATATCTAGGTCTAGAACCTCTTTGGCCTTGCTTGTTGCTATTTTGCCTCCAAATCTAAATGGTGAAGGACTCATTGATGAGCCACTCAATGGTGCCTTTCCCTCATGGGTAACAAGCAAGGATAGGAGGCTTTTGGAGTCTACGGTTGAGGCGATCACTGCCAATGTTGTGGTGGCTAAGGATGGTAGTGGAAAATTCAAGACAGTGGCAGAAGCAGTGGCATCTGCACCGGACAATGGTAAGACAAGGTATGTTATCTATGTGAAGAAGGGAACATACAAAGAGAATGTTGAAATTAGTGGGAAGAAGAAGAATGTGATGTTGATTGGTGATGGTATGGATGCAACTTTAATCACTGCCAGCTTGAATTTTGTGGATGGAACAACCACCTTCAAGAGTGCCACTGTTGCTGCTGTTGGTGATGGGTTTATAGCCCAAGACATTTGGTTCCAAAACACAGCCGGAGCAGCCAAGCACCAGGCGGTGGCTCTCCGTGTCGGTGCTGACCAATCCGTCATAAATCGGTGCCGCATTGATGCCTTCCAAGACACTCTCTACGCCCATTCTAACCGGCAGTTCTACCGTGACTCCGTCATCACCGGCACAATTGACTTCATATTTGGAAATGCAGCCGTTGTATTCCAAAACTCAAAGTTTGTGGCCCGTAAGCCCATGAGTAATCAGAACAACATGGTGACAGCCCAAGGAAGAGAAGATCCAAACCAAAACACAGGAACTTCAATCCAAAAATGTGAACTAACACCAAGTTCAGATCTTAAACCTGTTGTTGGGTCAATCAAAACATATTTGGGGCGACCATGGAAGAAGTATTCAAGAACAGTTGTTTTGCAATCTACAATAGATAGTCACGTTGATCCATCAGGATGGGCTGAATGGGATGCTGCCTCTAAAGACTTTTTGGACACATTGTATTATGGAGAATACATGAACAGTGGTGCTGGTGCTGGTACTAGCAAGAGAGTGAAATGGAAAGGGTATCATATCATCACAAATGCTGCAGAGGCCAACAAGTTCACAGTTAAACAACTCATCCAAGGTGATGTTTGGTTGAAGAACACTGGAGTCACCTTTACTGAGGGTCTCTAA 1647 0.4378 MGTQESLLDKPNKYFSNTFWLVLSVATILSSSLFIASYLIIKPTSSYFNLSSPHYACEHAIDKASCLAHCSEVAAQKLNLLQSILIISTSHMHKALHNTNHVKLRINSPKEQAALVDCEELMELSINRVWDSIMALSKNTTSSIQDAHSWLSSVLTNHATCLDGLEGSARALMEAELEDLISRSRTSLALLVAILPPNLNGEGLIDEPLNGAFPSWVTSKDRRLLESTVEAITANVVVAKDGSGKFKTVAEAVASAPDNGKTRYVIYVKKGTYKENVEISGKKKNVMLIGDGMDATLITASLNFVDGTTTFKSATVAAVGDGFIAQDIWFQNTAGAAKHQAVALRVGADQSVINRCRIDAFQDTLYAHSNRQFYRDSVITGTIDFIFGNAAVVFQNSKFVARKPMSNQNNMVTAQGREDPNQNTGTSIQKCELTPSSDLKPVVGSIKTYLGRPWKKYSRTVVLQSTIDSHVDPSGWAEWDAASKDFLDTLYYGEYMNSGAGAGTSKRVKWKGYHIITNAAEANKFTVKQLIQGDVWLKNTGVTFTEGL 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1637 548 ProSitePatterns Pectinesterase signature 2. 379 388 IPR033131 -
Lal23g1637 548 Gene3D - 229 548 IPR012334 -
Lal23g1637 548 PANTHER PECTINESTERASE 39 546 - -
Lal23g1637 548 Pfam Pectinesterase 235 534 IPR000070 GO:0030599|GO:0042545
Lal23g1637 548 ProSitePatterns Pectinesterase signature 1. 260 279 IPR018040 -
Lal23g1637 548 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 190 IPR035513 -
Lal23g1637 548 Gene3D Invertase/pectin methylesterase inhibitor family protein 54 194 IPR035513 -
Lal23g1637 548 Pfam Plant invertase/pectin methylesterase inhibitor 56 178 IPR006501 GO:0004857
Lal23g1637 548 SUPERFAMILY Pectin lyase-like 231 547 IPR011050 -
Lal23g1637 548 TIGRFAM PME_inhib: pectinesterase inhibitor domain 49 169 IPR006501 GO:0004857
Lal23g1637 548 PANTHER PECTINESTERASE 39 546 - -
Lal23g1637 548 SMART PMEI_2 48 190 IPR006501 GO:0004857
Lal23g1637 548 CDD PMEI-like_4 59 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1637 Lal-Chr23 16124024 16127002 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1637 3 548 Carbohydrate Esterase AT1G11580 54.367 0.0 599
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1637 K01051 - gmx:100815836 833.172