Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1635 ATGTTGAACACAAACGTGTTATATTCATCTCACAATCACAACATGTTTGATTTGACTTCATCCCACAAAACTTCATTTGAGAATGATTCAGAGATCAAATCAGGAGGTGATGGTGGCAATGAGACATTAATAATGGATTACGAGGAGGCCGATCCTGAGGGTAGTGAGGACCAAGATCCCAACCGGCCACGACCCAAAAAGAAGGGCTTCCATCGCCACACACAGCTCCAAATACAAGAAATGGAATCGTTCTTCAAGCAGTGTCCTCACCCAGATGACAAGCAAAGAAAAGAGCTTAGCCGTGAGCTAGGGTTAGAGCCTTTGCAAGTCAAGTTTTGGTTCCAAAACAAGCGCACCCAAATCAAGGCTCAACATGAACGCCATGAAAATTCTATTCTGAAGGCTGAGAATGAAAAACTTCGTGCTGAGAACATTAGGTACAAGGAGACCCTAAGCAATGCTACATGCCCTAACTGTGGAGGCCCAGCTACTATCGGTGAAATGTCTTTTGATGAGAAGCACTTACGAATTGAGAATGCTCGATTAAGAGAAGAGATTGATAGGATTTCAGGAATTGTGGCAAAATATATGGGAAAGCCGGTGACATCTTACTCCAACCTCTCATCTCACAATAATAATAATAATAATACTCACTTCCTTGATCTTGGAGTTGGTAACTGTGGAGCACAGTCATCAAGCGGCATGGTTGGAGAAATTTATGGTGGTAGTAGTAGTGACCTTTTTAGGTCACTTCCAGTTCCAGCTGATGCTGACAAACCAATGATTGTAGAGCTTGCTGTTGCAGCAATGGAGGAACTAACCAGATTAGCTCAGGCTACACACCCTTTATGGGTGCCCAACGACGACTACCTTACTGAGATTCTCAATGAAGATGAATACCTGAGAACTTTCCCTAGAGGTATCGCTCCCAAACCCTTGGGCTTAAGATCTGAAGCTTCAAGAGAATCTGCTGTCGTGATCATGAACCATACTAACCTTGTTGAGATCCTTATGGATGTGAATCAATGGTCAAACGTGTTTTGCGGTATTGTGTCAAGAGCGTTGACACTTGAAGTCCTGTCAACTGGAGTGGCAGGAAACTACAATGGAGCCCTACAAGTGATGTCAGCTGAATTCCAAGTTCCATCACCACTTGTTCCTACTCGTGAGAACTACTTTGTAAGGTACTGTAAAAAACATCAAAATGGGACATGGGTAATTGTTGATGTTTCATTGGATAATCTACGACCTAGTATACCCTCAAGAAGTCGGAGAAGGCCCTCTGGTTGTGTTATTCAAGAATTGCCAAATGGTTATTCCAAGGTTATATGGATTGAACATGTAGAAGTGGATGATAGAGCGATTCATAGTTTATATAAACCTCTAATTAATTCGGGACTTGCATTTGGAGCTAAAAGGTGGGTGGCTACATTAGATCGACAATGCGAACGTCTTGCTAGTTCCATGGCCAGCAACATATCAGCAGGGGACCTTTGTGTGATAACCAGTGCTGAAGGAAGGAAAAGTATGTTGAACCTGGCAGAAAGAATGGTAATGAGCTTTTGCAGTGGTGTTGGTGCATCAACATCACATGCTTGGACAACCCTATCTGCAACTGGATGTGATGATGTAAGGGTCATGACCAGAAAGAGTATGGATGACCCTGGCAGACCCCCTGGTATAGTACTTAGTGCTGCAACTTCTTTTTGGCTTTCAGTTCCTCCAAAGAGGGTTTTTGATTTCCTCAGAGATGAAAACTCAAGAAGAGAGTGGGATATTCTCTCCAACGGCGGTCTAGTTCAAGAAATGGCACACATTGCAAATGGTCATGATCCTGGCAACTGTGTCTCTTTACTTCGTGTCAATAGTGTTAATTCCAACCAAAGCAACATGCTGATACTTCAAGAGTGTTGCACTGATTCCAGTGGCTCATATGTAGTCTATGCTCCTGTTGATATTGTTGCCATGAATGTAGTGTTGAGTGGGGGAGATCCAGATTATGTTGCACTCTTGCCCTCAGGTTTTGCTATTCTTCCTGATGGGCCTGGATTGAATAATGGAGGAAGAATAGTTGATGTTGGTTCTGGAGGTTCTCTTCTCACAGTTGCATTTCAGATATTAGTTGATTCAGTCCCAACAGCAAAACTATCTCTGGGTTCAGTGGCAACTGTCAACAGTTTAATTAAGTGCACAGTTGAAAGGATCAAAGCTGCAGTCATATGTGACAATACCTAA 2235 0.4286 MLNTNVLYSSHNHNMFDLTSSHKTSFENDSEIKSGGDGGNETLIMDYEEADPEGSEDQDPNRPRPKKKGFHRHTQLQIQEMESFFKQCPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQIKAQHERHENSILKAENEKLRAENIRYKETLSNATCPNCGGPATIGEMSFDEKHLRIENARLREEIDRISGIVAKYMGKPVTSYSNLSSHNNNNNNTHFLDLGVGNCGAQSSSGMVGEIYGGSSSDLFRSLPVPADADKPMIVELAVAAMEELTRLAQATHPLWVPNDDYLTEILNEDEYLRTFPRGIAPKPLGLRSEASRESAVVIMNHTNLVEILMDVNQWSNVFCGIVSRALTLEVLSTGVAGNYNGALQVMSAEFQVPSPLVPTRENYFVRYCKKHQNGTWVIVDVSLDNLRPSIPSRSRRRPSGCVIQELPNGYSKVIWIEHVEVDDRAIHSLYKPLINSGLAFGAKRWVATLDRQCERLASSMASNISAGDLCVITSAEGRKSMLNLAERMVMSFCSGVGASTSHAWTTLSATGCDDVRVMTRKSMDDPGRPPGIVLSAATSFWLSVPPKRVFDFLRDENSRREWDILSNGGLVQEMAHIANGHDPGNCVSLLRVNSVNSNQSNMLILQECCTDSSGSYVVYAPVDIVAMNVVLSGGDPDYVALLPSGFAILPDGPGLNNGGRIVDVGSGGSLLTVAFQILVDSVPTAKLSLGSVATVNSLIKCTVERIKAAVICDNT 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1635 744 CDD homeodomain 67 125 IPR001356 GO:0003677
Lal23g1635 744 ProSitePatterns 'Homeobox' domain signature. 99 122 IPR017970 GO:0000981|GO:0006355
Lal23g1635 744 SUPERFAMILY Homeodomain-like 56 124 IPR009057 -
Lal23g1635 744 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 23 741 IPR042160 -
Lal23g1635 744 SUPERFAMILY Bet v1-like 256 486 - -
Lal23g1635 744 CDD START_ArGLABRA2_like 259 483 - -
Lal23g1635 744 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN PROTODERMAL FACTOR 2 23 741 - -
Lal23g1635 744 Pfam Homeodomain 72 122 IPR001356 GO:0003677
Lal23g1635 744 SMART HOX_1 65 128 IPR001356 GO:0003677
Lal23g1635 744 Pfam START domain 265 484 IPR002913 GO:0008289
Lal23g1635 744 Coils Coil 118 150 - -
Lal23g1635 744 Gene3D - 325 487 IPR023393 -
Lal23g1635 744 MobiDBLite consensus disorder prediction 17 72 - -
Lal23g1635 744 Gene3D - 53 140 - -
Lal23g1635 744 ProSiteProfiles 'Homeobox' domain profile. 64 124 IPR001356 GO:0003677
Lal23g1635 744 SMART START_1 264 484 IPR002913 GO:0008289
Lal23g1635 744 ProSiteProfiles START domain profile. 255 487 IPR002913 GO:0008289
Lal23g1635 744 SUPERFAMILY Bet v1-like 505 736 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1635 Lal-Chr23 16107448 16114245 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1635 12 742 Homeobox Transcription Factor Family AT4G04890 75.701 0.0 1135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lal23g1635 START 2.1e-55 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1635 K09338 - qsu:112016283 1161.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1635 23 16107448 16114245 Lal12g0359 12 2576238 2580170 PCT
Lal12g0359 12 2576238 2580170 Lal23g1635 23 16107448 16114245 PCT