Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1620 ATGGAAGTGGGAATGAGATCAGGTGGCCCTTCCGGGGTTCTGGTGAAGAAGAAGAACGCCTCCGGTTGTTTAATTGTTCGAAAGAAAGGGAATGATGGAGTGGACGGTGCTGCTACTACTGCTGTTGCTATTGGTTCATCTTCCACTTCTCGCAAGTTCCATGAAAGACCTCGCAGCATGCCTTTCAATGATTCCGGATCCAGTGGTGAGTTACTCATGCCTCATAGTAATAAAAGGGTAGGCCCTGATACTGTTCGAGTCTGTAATAGTTTGACTCCATTTGAACCTGGTGTGGCACCTGGGAGAGAATTTGGTAGGAAGAGGGGTAATGGTGATGCTCTGATTGCGGAGAATGTTTTGGACAAGAGAGAAAGGAAACGCAGTAAGTTGGATGTGTGTAATTTCAGTGAGTATGACACTATGGATGCGGGGAAAATGAGGAGGAGACATGTTGATGATAACAGAGTTGGGTTTGGAGGAGGAAGGTTTACAGAGCCAGTGCATGTTACTAGGGAATTTGGAACAGGGTCAAGCAGAGACTTTCTTGATAAGATAAGGAACTCCTACTATGACAGGCCAAGTGACTTGTATCTGGGGGATAGTGTTGATCACAACAGGTTAAATATTAATAGGGATGGAGCTCCACTTCCTCCACCCTTGTCGAAGGAGAAGTTTAATTCACGTGAATTCATTAGGATTCAAGGTAAAAATGGTGTTTTGAAGGTAATGGTTAATAAGAGGAAGATGGGTGGGCCATCAGAACACTATGATCATCATAAACCTGTGGAAAGCACGCAAAGGTTGAGGACTGAGGGATTTGCGAATGAGAATGTTCTGAATCATCCTTCGACATATATTGAAACAAAACTTGCTCAGGAACCAGGTTTGAACGCGAGGCCAGAGAGGAAACAGATAGCATCAAGAAAATCTTTGTCCAGCAAGGACAGCAAGGGTGATGAGTGGGATTCAGACGATGGTGACACATCACTGAATCCAGTACTAAAAAATGCCGAAGTTTACAAGCCTGAGAAGAAGATGATATCTGAGAATGAAAAAACCATTACTGGAGATTGCAAATCTAAGAAGATAATCTCTGAAGATGAACAGACTCCTATGCATGAAAAGCTTCAGACTTCGGGAATTAAAGAAGGACAAATCAAGCGTGGTAGTGGCACAGAAAAACAAAAACTACGAGAACGAATTAGGGAGATGTTGCTGAATGCAGGTTGGACCATAGACTATCGGCCTCGGAGGAATAGAGACTATCTTGATGCAGTTTACATTAATCAAGCAGGTACTGCCTACTGGTCTATCATCAAGGCCTATGAAGCATTTCAAAAGCAATTGAATGTTAACGTTGATGAGGCCAAGCCCAAAGGAGATAGTTCTTCCTTTGCTCCTATAGCAGATGATGTGCTCAGTCAATTGACAAGGAAAACCAGGAAAAAAATGGAGATAGAATTGAAGAAAAATAATAAGAAGAAAAGACATGATAATGAAATTGACAGTAGAAATGAGCCTCGCATTAAAAGATGTTCCAGTAACAAGCATGATATGAATGGCATGGATGGTGATAGCAACGAAGATAAGTTAAGCTCCTTTATGAAGCAGGGAAATAAGCAATTGAAAAATAAGGTGATTGCAAATACCACTGCCAATGCTAGCTGTAAAAGCCAGAACACTACTGACCACTCAAATGTTGGAAAAGAAAAGTCATATTTAGGATGTGATCCTCATCTTATACATGGGAGGAAGAGCGGAAAGTATGGAAGATGCACACTGTTACTTCGTAATTCTAACAAGGGATTAAATTCAGAATCTGATGACTTTGTCCCACATACAGGCAAACAGACAGTGCTTTCTTGGTTGATTGATTGTGGGACAGTTGTGTTAAGCCAAAAGGTTCAGTACCGTAGACGGAAGAAGGTGGTGTTGGAAGGATGGATCACAAGAGATGGTATTCATTGTGGCTGCTGTAGTAAGATCCTCACAGTTTCAAAGTTTGAGCTTCACGCAGGAAGCAAATTGTCCCACCCATATCAAAACATATACTTGGAATCTGGAGTTTCTCTTCTACAATGCCAGATAGATGCATGGAACAAACAAGAGACTTCCGAGAAAATTGGTTTCCATTCAGTGGATATGAATGGTGATGATGCACATGATGATACTTGTGGCATATGTGGAGATGGAGGGGATTTAATCTGTTGTGATAGGTGTCCATCAACATTTCATCAGAGCTGCTTGGATATACAGATACTTCCTCCTGGTGAATGGCATTGTCCAAATTGCACCTGTAAATTTTGTGGGGTAGCTAGTGGAACTTCTAAAAATGATGATGCAACTCTGTATGCTCTACATCATGACTCTTGCACCAAGGAGTTGGATGTCCTTCCTAATTACTCCAATACATCAGACCCTTCTTTTTGTGGGAAAGAGTGCAAAGAGCTTTTTGAGCACTTGAAGAAGTACACTGGTTGCAAGCATGAACTAGAAGCAGGCTTTTCATGGTCTCTTATTCATAGAACAGATGAAGATTCAGAGGCAGATAATAGGGGAATTGCCCATAGGGTCGAATGCAATTCCAAGCTAGCTATTGCACTGACTGTGATGGATGAATGCTTTTTCCCTGTTGTTGATAGGAGGAGTGGGATCAATATGATTCGTAATGTTTTATACAATAGTGGGTCAAACATCAGTCGCTTGAGTTACTGTGGCTTTTACACTGCTATTTTGGAGCGAGGAGATGAAATCCTTTCTGTAGCATCTCTCAGGTTCCATGGGACTAAGTTAGCTGAAATGCCATTCATTGGAACTCGCTATATATATAGGCGCCAGGGGATGTGCCACCGGCTTTTTTCTGCCATTGAATCGGCTCTTTGCTCTTTGAAGGTTGAGAATCTGGTTATTCCCGCAATTGGTGAACTCATGCATACATGGACAACAAATTTTGGCTTTACACATCTCAATGAATCACTGAAGCACGAAATGAGGTCATTGAAGATGCTGGTTTTCCCTGGTATAGATATGTTACAGAAGCTATTAGTGGAGCAAGGAAAAAATGAGGGCAATACAGTCGCCGGAGGTTCGTCAGCTCTGCAAGATCTTAATGGAAATGTTGATGCCAGTTCAGGTTCTGCCAATAAGATAAATGATGAATTTAGTGGTGCTTCTGAAGAAGCAAACGATCAAGGTTCAGTGGACAAGACTTCTTGTTCCAAATCTCATTCTGAGGAAAGGTTATCTGATGATTCAGTTTCAGATAGATGTGCTACTCCTAGTACTAGTCATGGTGCACTAGACATGAAAACTGGAATAGCAATGGCTCCTCCTGTTGATGATGAATTGAATCCTTCTCCCAAATGTCAACGCGTTTCACCGAAAGACAATTCTGTAAACAGTCACCTCTTAGATGTTTCGGATTGCAACGAAAATCCAACTTCGGTTCTGGAAGCTGTTTGTCCTGATCCTTGTTCAGCAGAAAAACTTAACAGGAAATGTCACCCATTTGCTGCTATGAATCATGATTCACCCAAGCTTGACATTAACCTGGTGTTGGATTCTCAAGTGGCGGACAATACTCTCACCTCTAATGAGGTTTATTTGAATGATGTTCACAAAGCTCTTGAAGCTGCCCCTTCAGGGAATTTATCAGATGAAAGCATAACAAAGTAG 3675 0.4174 MEVGMRSGGPSGVLVKKKNASGCLIVRKKGNDGVDGAATTAVAIGSSSTSRKFHERPRSMPFNDSGSSGELLMPHSNKRVGPDTVRVCNSLTPFEPGVAPGREFGRKRGNGDALIAENVLDKRERKRSKLDVCNFSEYDTMDAGKMRRRHVDDNRVGFGGGRFTEPVHVTREFGTGSSRDFLDKIRNSYYDRPSDLYLGDSVDHNRLNINRDGAPLPPPLSKEKFNSREFIRIQGKNGVLKVMVNKRKMGGPSEHYDHHKPVESTQRLRTEGFANENVLNHPSTYIETKLAQEPGLNARPERKQIASRKSLSSKDSKGDEWDSDDGDTSLNPVLKNAEVYKPEKKMISENEKTITGDCKSKKIISEDEQTPMHEKLQTSGIKEGQIKRGSGTEKQKLRERIREMLLNAGWTIDYRPRRNRDYLDAVYINQAGTAYWSIIKAYEAFQKQLNVNVDEAKPKGDSSSFAPIADDVLSQLTRKTRKKMEIELKKNNKKKRHDNEIDSRNEPRIKRCSSNKHDMNGMDGDSNEDKLSSFMKQGNKQLKNKVIANTTANASCKSQNTTDHSNVGKEKSYLGCDPHLIHGRKSGKYGRCTLLLRNSNKGLNSESDDFVPHTGKQTVLSWLIDCGTVVLSQKVQYRRRKKVVLEGWITRDGIHCGCCSKILTVSKFELHAGSKLSHPYQNIYLESGVSLLQCQIDAWNKQETSEKIGFHSVDMNGDDAHDDTCGICGDGGDLICCDRCPSTFHQSCLDIQILPPGEWHCPNCTCKFCGVASGTSKNDDATLYALHHDSCTKELDVLPNYSNTSDPSFCGKECKELFEHLKKYTGCKHELEAGFSWSLIHRTDEDSEADNRGIAHRVECNSKLAIALTVMDECFFPVVDRRSGINMIRNVLYNSGSNISRLSYCGFYTAILERGDEILSVASLRFHGTKLAEMPFIGTRYIYRRQGMCHRLFSAIESALCSLKVENLVIPAIGELMHTWTTNFGFTHLNESLKHEMRSLKMLVFPGIDMLQKLLVEQGKNEGNTVAGGSSALQDLNGNVDASSGSANKINDEFSGASEEANDQGSVDKTSCSKSHSEERLSDDSVSDRCATPSTSHGALDMKTGIAMAPPVDDELNPSPKCQRVSPKDNSVNSHLLDVSDCNENPTSVLEAVCPDPCSAEKLNRKCHPFAAMNHDSPKLDINLVLDSQVADNTLTSNEVYLNDVHKALEAAPSGNLSDESITK 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1620 1224 Pfam PHD-finger 725 767 IPR019787 -
Lal23g1620 1224 ProSiteProfiles Zinc finger PHD-type profile. 722 767 IPR019787 -
Lal23g1620 1224 Pfam Tify domain binding domain 647 697 IPR032308 -
Lal23g1620 1224 MobiDBLite consensus disorder prediction 291 333 - -
Lal23g1620 1224 MobiDBLite consensus disorder prediction 488 525 - -
Lal23g1620 1224 MobiDBLite consensus disorder prediction 370 394 - -
Lal23g1620 1224 ProSitePatterns Zinc finger PHD-type signature. 725 764 IPR019786 -
Lal23g1620 1224 CDD PHD2_CHD_II 725 764 - -
Lal23g1620 1224 PANTHER PHD FINGER FAMILY PROTEIN 1 1140 - -
Lal23g1620 1224 SMART PHD_3 724 765 IPR001965 -
Lal23g1620 1224 MobiDBLite consensus disorder prediction 1072 1086 - -
Lal23g1620 1224 MobiDBLite consensus disorder prediction 1026 1071 - -
Lal23g1620 1224 MobiDBLite consensus disorder prediction 48 70 - -
Lal23g1620 1224 MobiDBLite consensus disorder prediction 1026 1130 - -
Lal23g1620 1224 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 712 824 IPR013083 -
Lal23g1620 1224 SUPERFAMILY FYVE/PHD zinc finger 714 770 IPR011011 -
Lal23g1620 1224 MobiDBLite consensus disorder prediction 302 324 - -
Lal23g1620 1224 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER PROTEIN 1 1140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1620 Lal-Chr23 16018803 16025907 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1620 4 1016 PHD Transcription Factor Family AT4G14920 47.378 0.0 830
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal23g1620 TDBD 4.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1620 - - gmx:102666194 1529.61