Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1612 ATGGACACACCAGAGAGGAATCAAATGAACGCTCCTCTTAATCCCAACCAGGATTCACCTGTGTTCAATTTTATCAACACATTATCTCCTATCAAACCTGCTAAGCATGTTCCATTTACTCACACTTTCAATTCACTCACATTTTCATCTCCTCCTTCCCTCTTCACTGAATCCAGATTCTTAAAGAGGCATATCTCTTTACACACACCAAAGCCTCACGATTCTTCTCAACATGTCAATCCAAATTATTCAAATCAAGGGATTCGTGTAGCAGACGATGCAATCCACTTACCACAACCCTTAAAGTATAATTGTCGTAGCCCTGCCTATGATTCAACATTTTCTGCTGATAACACCCTTTTGGAGTTGCCTAGGGAGGCAGCACCAGATGTTACCTATGTTCAGGAAGAAGCCTGTAAAACAGACTCAGTTCACAACGAATTTATTCTTCAGGGAACCTGTCGAATTCAGCCAAAGAGTGAATTCCCGGACTGTGGTTGGGATGGTTTAATTCCTGATACTACTGATCTCTTAATTTTTAATTCGCCAAATGAAGCCAGAGCTTTTAATGGCCTATTTCAGAAACCCTTGGACTCTTCTGCAGATTTAATGTCTCTGTTACCACAATCTTCAATCATCAATAATGGCCACAATGTGCAATTTCTTCATTCAATTGCTTCTCGTTCTGAACATGAAATTCAAGATCAGCATTCCGACCCATCAGCAGTCACTGAAACAGACCATGCTGCCATGAATAGCAATCCAAATGAGAAAACGGATGAAGAGAATGTATTGATTGCTGAACAAATGAGTCACTCTAGAAGCATTTTTTATTGTGTTAAGCTTGTTTCCGTGATGCACCGTGGTCTGCGGAGGCGCTGTCTAGACTTTGAGATGGCCAGTGTGCGGTGGAAGAATTCAGATGATAATTCAAATACTGGTTCCTCCAGTACTTTACATGGGAGGAATGTCACTGATGAAAACCAACTGGTTCATACAAAACACAATAGTGATTCACGGAAGTGCATTTTGCCGGGAATCGGTTTACACTTGAATGCACTTGCAACCTTAAAAGATCACAATGGCATAAAAAATGAAAAGTTGTCCTACGGAAGAAAACTCAGTCTGATTTGCTCCACTTCTTCATTGAAAATCTCTACAAGCCAAGAACATCATCATCTAGCACTGGGTGCTGTATCATCTGAAAGAGAAATAGATCCGTCAAACAATAGTGTTCAGCCTGCTGAAGATTGTCGTGAAGATCTCAATCAGAATAGCCCCAAAAGGAAAAGGCAAGTGCAGTTGTTGCTTACCATGCTTATGTTTCATAATCTCCATTCCATTATCTTCTTTTTCTTTTCTTCATTAGCTGATAGTCACCCAAGTTTAATTTGCAGGCGTAAGTCGGACCCAGCTGGAGAAACCGAGGGCTGCAAGCGTTGTAATTGCAAGAAATCAAAGTGTTTGAAGCTTTATTGCGAGTGCTTTGCTGCTGGGGTCTACTGCATTGAACCATGTTCCTGTCAGGATTGCTTCAACCAGGCTATTCACGAAGATACCGTTCTTCAAACTCGCAAGCAGATTGAGTCTCGTAACCCTCTTGCATTTGCACCTAAAGTCATCAGAAGTTCCGAGTCTGTTCCTGAAGTTGGGGATGATCCAAATAAAACTCCAGCTTCAGCACGACATAAAAGAGGATGCAACTGCAAGAAATCAAGCTGCCTAAAGAAGTACTGTGAATGTTTTCAGGGTGGTGTTGGTTGCTCCATTAGCTGTAGATGTGAAGGGTGCAAAAATGCTTTTGGTAGGAAGGATGGTTCTGCTCTTGTAGAAGCTGAACCAGAAGAAGAAACAGAGGCAGGGGAAAGGGGTGTGGCTGACAAAGATTTACAGAAAACTGAAATTCAGAATATTGAAGATCATTCAGACTCTGCTCTTGTCTCAACACCATCACTGATTTCCAGGTCATTGCTTCCATTGCCATTTTCATCCAAGCGAAAGCCACCAAGATCTTTTGTGGCGACCATCTCTGGTTCTGCATTGTTTGCCAGCAGCAGCCAAAAGCTTGAGAAACCAAGTTCTCTTTGGTCTCAATCTAAGCATTTTCAAACTGTTCCTGATGATGAAATCCCAGACGTTCTCAGCATTGATAGCTCTCCTGTTGCATGCATCAAAACTTCTTCTCCAAATGGTAAGAGAATCTCTTCTCCTAACTGTGACTTGGGACAGTCTTCGAGTCGCAGAGGTGGCCGAAAGTTGATCTTACAATCCATCCCTTCATTTCCATCCCTCACCAATCAGCAGTAG 2307 0.4209 MDTPERNQMNAPLNPNQDSPVFNFINTLSPIKPAKHVPFTHTFNSLTFSSPPSLFTESRFLKRHISLHTPKPHDSSQHVNPNYSNQGIRVADDAIHLPQPLKYNCRSPAYDSTFSADNTLLELPREAAPDVTYVQEEACKTDSVHNEFILQGTCRIQPKSEFPDCGWDGLIPDTTDLLIFNSPNEARAFNGLFQKPLDSSADLMSLLPQSSIINNGHNVQFLHSIASRSEHEIQDQHSDPSAVTETDHAAMNSNPNEKTDEENVLIAEQMSHSRSIFYCVKLVSVMHRGLRRRCLDFEMASVRWKNSDDNSNTGSSSTLHGRNVTDENQLVHTKHNSDSRKCILPGIGLHLNALATLKDHNGIKNEKLSYGRKLSLICSTSSLKISTSQEHHHLALGAVSSEREIDPSNNSVQPAEDCREDLNQNSPKRKRQVQLLLTMLMFHNLHSIIFFFFSSLADSHPSLICRRKSDPAGETEGCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCQDCFNQAIHEDTVLQTRKQIESRNPLAFAPKVIRSSESVPEVGDDPNKTPASARHKRGCNCKKSSCLKKYCECFQGGVGCSISCRCEGCKNAFGRKDGSALVEAEPEEETEAGERGVADKDLQKTEIQNIEDHSDSALVSTPSLISRSLLPLPFSSKRKPPRSFVATISGSALFASSSQKLEKPSSLWSQSKHFQTVPDDEIPDVLSIDSSPVACIKTSSPNGKRISSPNCDLGQSSSRRGGRKLILQSIPSFPSLTNQQ 768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1612 768 MobiDBLite consensus disorder prediction 229 260 - -
Lal23g1612 768 ProSiteProfiles CRC domain profile. 477 602 IPR005172 -
Lal23g1612 768 MobiDBLite consensus disorder prediction 243 260 - -
Lal23g1612 768 MobiDBLite consensus disorder prediction 608 629 - -
Lal23g1612 768 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 767 - -
Lal23g1612 768 MobiDBLite consensus disorder prediction 725 749 - -
Lal23g1612 768 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 1 767 IPR044522 GO:0003700
Lal23g1612 768 MobiDBLite consensus disorder prediction 306 337 - -
Lal23g1612 768 MobiDBLite consensus disorder prediction 403 420 - -
Lal23g1612 768 MobiDBLite consensus disorder prediction 306 326 - -
Lal23g1612 768 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 479 514 IPR005172 -
Lal23g1612 768 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 565 600 IPR005172 -
Lal23g1612 768 SMART CXC_2 562 603 IPR033467 -
Lal23g1612 768 SMART CXC_2 476 517 IPR033467 -
Lal23g1612 768 MobiDBLite consensus disorder prediction 403 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1612 Lal-Chr23 15988922 15993092 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1612 17 767 CPP Transcription Factor Family AT4G14770 40.990 1.43e-144 437
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Lal23g1612 TCR 6.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1612 - - gmx:100815907 880.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0031 16 205264 209346 Lal23g1612 23 15988922 15993092 LSH