Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1598 ATGATGAGGAGAAGTGATGAAAGTGGTTTGAAGAAGGGGCCATGGAGCCCAGAAGAGGATAAAATATTGGTGGAATACATTGAGAGACATGGTCATGGGAGTTGGAGAGCACTTCCAAAGGTTGCAGGATTGAACAGGTGTGGAAAGAGTTGCAGGCTAAGATGGACTAATTATCTCAGGCCTGATATCAAAAGAGGAAAATTCACTGATCAAGAAGAGCAACTCATCATCAATTTACATGCACTTCTTGGCAATAAGTGGGCAGCTATATCAGGTCATCTACCAGGAAGAACTGATAATGAAATTAAGAACTTTTGGAATACACATTTAAAGAAAAAGCTTATACAAATGGGGTTAGATCCACTTACTCATCGTCCAAGATCAGATCACCAAAATCTTCTTACCAACCTACAACAAATTCTTGCAGCTGCAAATATGTTCAGCAATTTCACAAACCCTTCTGATAATACTAATAATAATAATGCTTTAAGGCTACTACACTCAGATGCAACACAAGTAGCCAAACTTCACTTGCTACACACTATTCTTCAACTCATGGGACCCATTCCAGCTTCTACAGATTTAGAGTCATCACTTCATTATCTTGATGTGTTAGGATTGAACAATCACTCTAACCTCCAAAACCTATGCAATCATACTTCAATTGGTTTTTCTTCTGAAAATCAACTACCCAACTTGCATAACTTTGAAGCAGTTCATCATCATCAACACTTGAATGGAGGGAGAAATATTAGTTGCATTGGTGATGAGTCAAAAAAGTTTGATGAACAACTTGGTTCCACAAGTGTTGTTGCCCCCACACAATCATCAAATTCAGTATTACTTCCAAACCTGCAGGTTTCAATGACCTCACATGAAGAGCCTGGTTGTTCCACAATAAAACAAGATGAAAATCCAACAACCACTTTTGAAATGTGGGGTGATTTCATGGATGAAGAAGCAGGTGATGTTTATTGGAAAGATTTCATTGAGTAA 996 0.3815 MMRRSDESGLKKGPWSPEEDKILVEYIERHGHGSWRALPKVAGLNRCGKSCRLRWTNYLRPDIKRGKFTDQEEQLIINLHALLGNKWAAISGHLPGRTDNEIKNFWNTHLKKKLIQMGLDPLTHRPRSDHQNLLTNLQQILAAANMFSNFTNPSDNTNNNNALRLLHSDATQVAKLHLLHTILQLMGPIPASTDLESSLHYLDVLGLNNHSNLQNLCNHTSIGFSSENQLPNLHNFEAVHHHQHLNGGRNISCIGDESKKFDEQLGSTSVVAPTQSSNSVLLPNLQVSMTSHEEPGCSTIKQDENPTTTFEMWGDFMDEEAGDVYWKDFIE 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1598 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 114 IPR017930 -
Lal23g1598 331 ProSiteProfiles Myb-like domain profile. 60 110 IPR001005 -
Lal23g1598 331 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Lal23g1598 331 PANTHER MYB TRANSCRIPTION FACTOR 4 331 - -
Lal23g1598 331 SUPERFAMILY Homeodomain-like 9 106 IPR009057 -
Lal23g1598 331 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 59 IPR017930 -
Lal23g1598 331 CDD SANT 67 110 IPR001005 -
Lal23g1598 331 Gene3D - 11 64 - -
Lal23g1598 331 Pfam Myb-like DNA-binding domain 65 110 IPR001005 -
Lal23g1598 331 Pfam Myb-like DNA-binding domain 12 59 IPR001005 -
Lal23g1598 331 CDD SANT 14 59 IPR001005 -
Lal23g1598 331 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 331 - -
Lal23g1598 331 Gene3D - 67 114 - -
Lal23g1598 331 SMART sant 11 61 IPR001005 -
Lal23g1598 331 SMART sant 64 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1598 Lal-Chr23 15897974 15900019 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1598 6 331 MYB Transcription Factor Family AT5G16770 44.638 4.55e-87 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lal23g1598 Myb_DNA-binding 2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1598 K09422 - gmx:547488 361.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1598 23 15897974 15900019 Lal23g1598 23 15897974 15900019 ECH