Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1591 ATGGGAACTCGGCCTCACCAACCAAGTCGAGAGGAAGACGATGAGGAGCTTCTAGGTCACGGAACAACGATTTCAGGTCAATCCATGTCAACAAGCAGAAGTGTCGGGTCTCCATCCAGCCGGAGTGAGCAAACAATGGCAATGCCAGTTAGTGAAAACAGTTTTCTTAGGTTGAACCATCTTGATATTCAAGGAGATGATGCTGGATCACAGGGAACGGTTGCTAGCAAGAAGAAAAGGAGAGGCCAACGTGCTGTTGGAGGTGATAAGAATGGAAGAGGGCTCCGCCAATTTAGTATGAAAGTGTGTGAGAAGGTGGAAAGCAAGGGAAGAACAACTTACAATGAGGTAGCAGATGAACTAGTGGCAGAATTTTCTGATCCAAGCAGTGGTGTTTCAACCCCTGATCAGCAACAATATGATGAGAAAAACATTCGTCGAAGGGTCTATGATGCTTTGAATGTTCTCATGGCAATGGATATTATTTCCAAGGATAAAAAGGAAATACAATGGAAGGGTCTTCCTCGTACCAGTGTGAACGATATTGAAGAACTAAAGGCAGAGCGTCTTGCATTGAGGAATAGAAATGAACAAAAAAGGGCCTATTTGCAAGAGCTGAAGGAGCAGTTGGTAGGTCTTGAGAACCTTGTACAACGAAATGAGCAACTATATAGCTCTGGAAATGCTCCCAATGGGGGTGTATCTTTGCCTTTTATTCTGGTGCAGACACGCCCTCATGCAACTGTTGAAGTGGAAATTTCAGAAGATATGCAGCTTGTGCATTTTGATTTCAATAGCACACCTTTTGAACTGCATGATGACAACTATGTCCTCAAGGAAATGAAATTTTGCGAGAGACCTCAGAATGATACTCTGACACTTAATCTTACTGACGTAGGTGAAAGCTCTAACATGTCAGGTGGTTTGTATGATGCTCAAGTTCCTACTATAGTTTCGAACCCACCAGTTAGGCCTCTCTCATCACCACCACTCCCTGGAATATTGAAGGCAAGAGTTAAGAATGAGCACTGA 1032 0.436 MGTRPHQPSREEDDEELLGHGTTISGQSMSTSRSVGSPSSRSEQTMAMPVSENSFLRLNHLDIQGDDAGSQGTVASKKKRRGQRAVGGDKNGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFSDPSSGVSTPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSVNDIEELKAERLALRNRNEQKRAYLQELKEQLVGLENLVQRNEQLYSSGNAPNGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKEMKFCERPQNDTLTLNLTDVGESSNMSGGLYDAQVPTIVSNPPVRPLSSPPLPGILKARVKNEH 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1591 343 SMART E2F_TDP_2 90 173 IPR003316 GO:0005667|GO:0006355
Lal23g1591 343 CDD DP_DD 178 281 IPR014889 -
Lal23g1591 343 PANTHER TRANSCRIPTION FACTOR DP 18 343 IPR015648 GO:0005667|GO:0051726
Lal23g1591 343 MobiDBLite consensus disorder prediction 1 47 - -
Lal23g1591 343 Pfam E2F/DP family winged-helix DNA-binding domain 93 173 IPR003316 GO:0005667|GO:0006355
Lal23g1591 343 MobiDBLite consensus disorder prediction 63 93 - -
Lal23g1591 343 SMART DP_2 180 341 IPR014889 -
Lal23g1591 343 SUPERFAMILY "Winged helix" DNA-binding domain 93 174 IPR036390 -
Lal23g1591 343 MobiDBLite consensus disorder prediction 1 19 - -
Lal23g1591 343 Pfam Transcription factor DP 181 315 IPR014889 -
Lal23g1591 343 SUPERFAMILY E2F-DP heterodimerization region 180 294 IPR037241 -
Lal23g1591 343 Gene3D - 86 178 IPR036388 -
Lal23g1591 343 Coils Coil 182 223 - -
Lal23g1591 343 PIRSF Txn_factor_DP 3 343 IPR015648 GO:0005667|GO:0051726
Lal23g1591 343 MobiDBLite consensus disorder prediction 21 47 - -
Lal23g1591 343 Gene3D Transcription factor DP 179 303 IPR038168 -
Lal23g1591 343 PANTHER TRANSCRIPTION FACTOR DP 18 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1591 Lal-Chr23 15846162 15852850 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1591 86 289 E2F-DP Transcription Factor Family AT5G02470 52.133 3.87e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Lal23g1591 DP 1.1e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1591 K04683 - gmx:100797603 555.058