Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1578 TCCGTAGCCATAAAAATTCATGCACTTTCTAAGCATGGCAACATTGAAGAAGCTCTTTCCCTTGTTTACAAACATGATACACATTCTTCTCTGTTCCTTCAAGCCTATGCCACTTTGTTCCATGCATGTGCCCAAAAAAAGTGCCTCCAACCAGGCATGGCTTTGCACTATTACATACTTCAGACACACCCCACAATTCAAAATGACATCTTTCTCACTAATCACATTATAAACATGTACTGTAAATGTGGCCAATTGGGTTATGCCCGCTTCCTGTTTGATCAAATGCCCCACAGAAACATTGTTTCTTGGACTGCACTCATTTCTGGATATGCCCAATGTGGCTCAATCAATGAGAGTTTTTCGCTATTTTCTGCGTTGTTTGCTCAGTTGCGTCCTAACGAATTTGCTTTTGTGAGTTTGCTTAGCGCGTGCGAGGAGCGTGATATTAAATGTGGTATACAGGTGCATGCAGTTGCTTTGAAAATTTCTTTGGATGCTAGTGTATATGTTGCAAATGCTCTTATTACAATGTACAGCAAGTGTTCGGACGCTGGTGGAGGTTATGATCATATATTGGGTGACGCGTGGACCGTGTTCAAGTTAATGGAGTTCCGAAATCTTATATCTTGGAATTCAATGATTGCAGGTTTTCAATTTCATGGACTTGCAGTTCGAGCCATTCACCTGTTCACACATATGTACTGCAATGGAATCGGGTTTGACCGTGCCACACTACTCAGTATTCTCTGTTCCTTGAATGAATATTGTACTTTTGAAGACATTAATATACATCTCAGGAGCTGTTTTCAACTGCACTGCCTCACTATTAAGAGTGGTCTTATTTCAGAAGTTGAAGTGATAACTGCATTGGTAAAATCATATGCAAAACTTGGGGGACCGATTTCTGATTGTTATAGGCTCTTCCTTGATACAGGTGGCAAACGGGATATTGTGTCGTGGACTGCTATTATTACTGTGTTCGCAGAACGTGATCCTGAGCAGGCTTTCCTCCTTTTCTGCCAGCTTCATCGTGAGAATTTTGTGCCAGATTGGCATACATTCTCAATTGCCTTAAAAGCATGCGCATACTTTGTAACTGAGCAGCCCGCCCTTGCGATCCACTCACAAATAATTAAAAAGGGGTTTCAGGATGATAAAATTCTTTCAAATGCCTTGATTCATGCTTATGCAAGGTGTGGCTCCTTAGCTTTGTCTGAACAAGTTTTTGATGTAATGGGTTGCCGTGATTTGGTTTCTTGGAATTCGATGCTTAAGTCTTATGCCTTACATGGACGTGCTAAAGATGCATTGGATCTCTTCCAACAAATGAATGTCCGTCCAGATTCTACCACCTTCGTTGCGCTTCTTTCAGCTTGTAGTCATGCTGGTCTTGTTGAACAAGGCGTGAATTTTTTTAACTCTATGTCTGATGCTCACGGTATTGTTCCTCAACTGGATCACTATGCCTGCATGGTTGACCTTTATGGACGAGCTGGGAAGATATTTGAGGCTGAAGAGTTGATACATAAAATGCCAATGAAACCGGATTCGGTGATATGGAGTTCGTTACTTGGGTCTTGCCGGAAGCATGGTGAGACTCGCTTGGCCAAACTAGCAGCTGATAAATTTAATGAGTTGGAGCCTGAAAAATCGTTGGGATATGTACAAATGTCAAACATATATTCCTCTGGTGGGAGTTTTATTGAAGCTGGCCTGATTAGGAAGGAAATGAGAGAGTCAAAGGTGAGAAAAGAACCTGGATTAAGCTGGGTTGAGATTGGGAAGCAGGTTCATGAGTTCGGCTCTGGTGGTAAACATCATCCACAGAGGGGGGCCATAGTAAAGCAGCTTGAGATTTTGATTCGTCGATTGAAAGAGATTGGTTATGCACCAGAAGTTAGCTTAGCCTTGTATGATACAGAAGAGGAGCACAAAGAAGACCAGTTGTTCCATCACAGTGAGAAGATGGCACTGGTATTTGCTATAATGAATGAAGAAAAATTGAGTTGTGGCAGGAAGATGAATTGTTGTACTGTCTTCTTATGTTCTTCACCCCTTTTTCCTTTCAAACCTAAACATTCTCTCATTAATTCTTCTTCTTCTTCATTGAAGTTGAAAAGGACAGAAAGATGCAGAGCGGTGTTGATGGATGATGCTCCCTTCACTGCTGCAATCGGCGCCTGCATGTTCACTTCTTTGCTATTCCCCGTTCCCTCTAAAAACAATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATTCCACCACCGATACAAGGCTCGCTGTAATGGGAATTCTCACTTTCGTCCCTTACTTCAATTGGCTCAGTTGGGTGTTTGCGTGGTTAGATAGTGGTAATCGCCGTTATGCTGTTTATTCTATCGTATATCTCCTTCCTTATCTCAGGACTAATCTATCGCTCTCCCCCGAAGAAAGCTGGCTTCCTATTGGTAGCATCCTCTTATGCATTGTTCACATTCAGCTGGAAGCGAGCATTAGAAATGGAGATATTAAGGGGTTTCAACTATTCAAGAATCACTCATCATCAAGTGCTGGAAACAAACCCAATTTCATTCAGCAACAACAAATCTTCCATGAGGGAAGCAAAAAAGAAAAGAAGAATCAGTTATCTGCCCAAGATCAGTCAAGAAATGTTAGTGATTGGGATGATTCTCAAAGGCCATTACGCGATGATGATGATGATGGTGCCGAACAAAGAAACAAACACTAA 2772 0.4152 SVAIKIHALSKHGNIEEALSLVYKHDTHSSLFLQAYATLFHACAQKKCLQPGMALHYYILQTHPTIQNDIFLTNHIINMYCKCGQLGYARFLFDQMPHRNIVSWTALISGYAQCGSINESFSLFSALFAQLRPNEFAFVSLLSACEERDIKCGIQVHAVALKISLDASVYVANALITMYSKCSDAGGGYDHILGDAWTVFKLMEFRNLISWNSMIAGFQFHGLAVRAIHLFTHMYCNGIGFDRATLLSILCSLNEYCTFEDINIHLRSCFQLHCLTIKSGLISEVEVITALVKSYAKLGGPISDCYRLFLDTGGKRDIVSWTAIITVFAERDPEQAFLLFCQLHRENFVPDWHTFSIALKACAYFVTEQPALAIHSQIIKKGFQDDKILSNALIHAYARCGSLALSEQVFDVMGCRDLVSWNSMLKSYALHGRAKDALDLFQQMNVRPDSTTFVALLSACSHAGLVEQGVNFFNSMSDAHGIVPQLDHYACMVDLYGRAGKIFEAEELIHKMPMKPDSVIWSSLLGSCRKHGETRLAKLAADKFNELEPEKSLGYVQMSNIYSSGGSFIEAGLIRKEMRESKVRKEPGLSWVEIGKQVHEFGSGGKHHPQRGAIVKQLEILIRRLKEIGYAPEVSLALYDTEEEHKEDQLFHHSEKMALVFAIMNEEKLSCGRKMNCCTVFLCSSPLFPFKPKHSLINSSSSSLKLKRTERCRAVLMDDAPFTAAIGACMFTSLLFPVPSKNNDDDDDDDDDDDDDDDDDDDDDDDDSTTDTRLAVMGILTFVPYFNWLSWVFAWLDSGNRRYAVYSIVYLLPYLRTNLSLSPEESWLPIGSILLCIVHIQLEASIRNGDIKGFQLFKNHSSSSAGNKPNFIQQQQIFHEGSKKEKKNQLSAQDQSRNVSDWDDSQRPLRDDDDDGAEQRNKH 923
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1578 923 Pfam PPR repeat family 317 363 IPR002885 -
Lal23g1578 923 TIGRFAM PPR: pentatricopeptide repeat domain 452 484 IPR002885 -
Lal23g1578 923 TIGRFAM PPR: pentatricopeptide repeat domain 419 444 IPR002885 -
Lal23g1578 923 Gene3D Tetratricopeptide repeat domain 260 367 IPR011990 GO:0005515
Lal23g1578 923 Gene3D Tetratricopeptide repeat domain 368 478 IPR011990 GO:0005515
Lal23g1578 923 Gene3D Tetratricopeptide repeat domain 1 148 IPR011990 GO:0005515
Lal23g1578 923 SUPERFAMILY ARM repeat 741 768 IPR016024 -
Lal23g1578 923 MobiDBLite consensus disorder prediction 743 769 - -
Lal23g1578 923 Pfam E motif 531 593 IPR046848 -
Lal23g1578 923 MobiDBLite consensus disorder prediction 740 769 - -
Lal23g1578 923 Gene3D Tetratricopeptide repeat domain 149 259 IPR011990 GO:0005515
Lal23g1578 923 Pfam PPR repeat 489 513 IPR002885 -
Lal23g1578 923 Pfam PPR repeat 419 444 IPR002885 -
Lal23g1578 923 Pfam PPR repeat 209 239 IPR002885 -
Lal23g1578 923 Pfam PPR repeat 74 101 IPR002885 -
Lal23g1578 923 Pfam PPR repeat 102 125 IPR002885 -
Lal23g1578 923 Pfam PPR repeat 6 22 IPR002885 -
Lal23g1578 923 Pfam PPR repeat 452 477 IPR002885 -
Lal23g1578 923 Pfam PPR repeat 391 414 IPR002885 -
Lal23g1578 923 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 3 644 - -
Lal23g1578 923 MobiDBLite consensus disorder prediction 881 923 - -
Lal23g1578 923 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 69 103 IPR002885 -
Lal23g1578 923 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 417 447 IPR002885 -
Lal23g1578 923 Pfam DYW family of nucleic acid deaminases 629 673 IPR032867 GO:0008270
Lal23g1578 923 PANTHER - 3 644 - -
Lal23g1578 923 MobiDBLite consensus disorder prediction 900 923 - -
Lal23g1578 923 Gene3D Tetratricopeptide repeat domain 479 549 IPR011990 GO:0005515
Lal23g1578 923 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 449 484 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1578 Lal-Chr23 15761993 15766401 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1578 36 668 Glycoside Hydrolase AT3G49170 33.230 1.98e-101 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1578 - - gmx:100799117 1088.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1578 23 15761993 15766401 Lal23g1578 23 15761993 15766401 ECH
Lal16g0176 16 1056578 1061770 Lal23g1578 23 15761993 15766401 LSH