Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1576 ATGGCGGCACCCGACGGAGAAACCTTAGATTTTGAGCCTGAGGACGATGACTTGATGGACGAGGACGCCGCCGTCGATGTTGCCGACGATTCTCCCAGCGCACCTCCTCTCCCTAAACTCAAATCCGCCATCACCTCTTCCTCCTCCCTCTCTGCTCCCAAGAAGACCAAGGGTCGCGGATTCCGTCAGGAAACCGATGCCAACCGCAACACCCGCCTCGCTGGCTCTGATTTCGATTCTCTCACCACAGAGGGTGGTCCCGGCCCTCAGAGATCCATTGAAGGGTGGATTATTTTGGTCACGGGCGTCCATGAGGAAGCACAGGAGGATGATTTGCAAAATGCCTTTGGTGAATATGGAGAGATTAAGAATCTCCATTTGAATCTTGATCGTCGTACTGGTTTTGTCAAAGGTTATGCACTGATTGAATATGAGCGTGCTGAGGAAGCTCGTAATGCAATAGAGAATTTGAATGGGTCTGAGCTTCTTACACAAACCATTTATGTTGACTGGGCTTTCAGCAGTGGACCCATCAATGACTCTATCCGAAGAAAGAATTTGAGACCATCTCGTGGTGAACGGCGCTCTAGGAGCCCTCGGAGAAGATATTGA 612 0.5065 MAAPDGETLDFEPEDDDLMDEDAAVDVADDSPSAPPLPKLKSAITSSSSLSAPKKTKGRGFRQETDANRNTRLAGSDFDSLTTEGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYALIEYERAEEARNAIENLNGSELLTQTIYVDWAFSSGPINDSIRRKNLRPSRGERRSRSPRRRY 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1576 203 SUPERFAMILY RNA-binding domain, RBD 89 200 IPR035979 GO:0003676
Lal23g1576 203 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 174 IPR000504 GO:0003723
Lal23g1576 203 MobiDBLite consensus disorder prediction 67 87 - -
Lal23g1576 203 PANTHER RNA-BINDING PROTEIN 8A 1 203 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Lal23g1576 203 MobiDBLite consensus disorder prediction 188 203 - -
Lal23g1576 203 MobiDBLite consensus disorder prediction 182 203 - -
Lal23g1576 203 MobiDBLite consensus disorder prediction 1 92 - -
Lal23g1576 203 MobiDBLite consensus disorder prediction 8 27 - -
Lal23g1576 203 MobiDBLite consensus disorder prediction 40 54 - -
Lal23g1576 203 CDD RRM_RBM8 90 177 IPR033744 GO:0003729
Lal23g1576 203 PANTHER BNAA05G15240D PROTEIN 1 203 - -
Lal23g1576 203 Gene3D - 39 186 IPR012677 -
Lal23g1576 203 PRINTS RNA binding motif protein 8 family signature 50 62 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Lal23g1576 203 PRINTS RNA binding motif protein 8 family signature 87 101 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Lal23g1576 203 PRINTS RNA binding motif protein 8 family signature 143 159 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Lal23g1576 203 PRINTS RNA binding motif protein 8 family signature 161 173 IPR008111 GO:0003723|GO:0005634|GO:0005737|GO:0006396
Lal23g1576 203 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 167 IPR000504 GO:0003723
Lal23g1576 203 SMART rrm1_1 97 170 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1576 Lal-Chr23 15744597 15747305 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1576 98 172 Eukaryotic Initiation Factors Gene Family AT3G11400 29.333 1.18e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1576 K12876 - gmx:100527187 269.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0049 15 359182 361594 Lal23g1576 23 15744597 15747305 LSH