Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1571 ATGGGGTGCATATGCTCAAAAGAATCATCATCGGACAAAGATAGAGTTGATGAGCATGAGAAGGAGAATGAGTTGAAAAAGTCTTCAGTACAATTGGTTGCTCCTAATGTCTCAAATGCAGAGTTAGATGGAAATGATGATGGTGGTTCGGTGCCACATATGGCTAAGTCATATTCACAAATAATCAAGAGTTGTGTCCCAGCACTATCACTATTAGAAGATAAAAACAATAACAACAACAACAACCCCTCAGATGTTGTTGTAAAATCATCGACAAAAGGACAACAGCATCGACATCTGACATGTATAACATTAGGTGCTGGTGAAAGAAAGCCAACGATGAGTAGACTACTAAGTGTGCCACATGGTCCAGGAGGACATGTTGATGATGCATGGCCATCATGGTTATCTTCTGTTGCTGGAGAAGCCATCAAAGGCTGGATTCCTAGAAGAGCAGACTCTTTTGAAAAATTGGACCAAATTGGACAAGGGGCTTATAGCAGTGTGCATAGAGCTCGTGACCTTGAAACAGGTAAAATCGTGGCTATGAAGAAAGTTCGATTTTCAAGTTCGGATCCTGAGAGTGTACGTTTCATGGCAAGGGAAATCTATATTTTGCGCCAACTTGACCATCCAAATGTTATGAAGCTTGAAGGTCTTGTCACTTCAACAACTTCCACCAGTTTGTACCTTGTCTTTGAATATATGGAACATGACCTTGCTGGATTATCAGCACTATCTGGCGTAAAGTTCACTGAACCACAGATAAAATGTTTCATGCAACAACTGCTTTGTGGGCTTGAACACTGCCATTTACGTGGTGTGCTGCACCGTGACATAAAGGGTTCAAATCTTTTGATTGACAACAATGGAAATCTTAAGATTGCAGATTTTGGTCTTGCAACTGTTTATAACCCTGATAAAAAGCATGCATTGACTAGCCGAGTTGTGACACTATGGTATAGGGCACCTGAGCTTTTGCTAGGTGCTACTGATTATGGAGCTGGAATTGATTTGTGGAGTGTTGGTTGCATTCTAGCAGAACTGTTGGTAGGGAAACCTATTATGCCTGGAAGAACTGAGGTTGAACAAATGCATAAGATTTTTAAGCTTTGTGGTTCCCCTTCTGAAGACTATTGGCAGAGAACAAAACTTCCACATTCAACAAGTTTCAAACCACAACACTGTTACAGACGTAATATCTTTGAAACATTTAAAAGTTTTCCTTCTTCAGCATTAACTCTTGTTGATAAGCTCCTCTCAATAGAACCTGAAAAGCGAGGATCTGTGACTTCTGCACTTAAGAGCGAGACAAACAAAGATGCATATGCTAGTTATGTTCTTAATCATGTTCAGAAGTTCGGTTACATGAATTTGCCTGGTTTACAATTTTTCACTACAAATCCCTTACCTTGCGATCCCTCGAGTTTACCGAAGTTTCCACCAACCAAGGAGTTTGATGCTAGGCATAGAGACAAGGATGAAATGAGAAAAAACAACGATGCTGTGAAAGGGCGTGGACCAGTATCTGTTTTAAGAGGAACAGGAGATACCAAAGGACTGAGATCACATGAGGGAGATCTACCTGTGCTGGGGAAGTCACGCAGTAGAATTAGCCGTGTTAAAAATCATTTACGGGATGAAGGTGGTTCACTCCACCATAAGAGGGAAGCAACAAAAGTACCACTACAAAATGGTTATGCACATTCTACTTCAATGATGCATGGAACTACAACAGGAGCATCCTCTACAAATAAAATATCAGACATGTCTATGAAGACTTCAGACTTAAGGACACAAAGTGAGAATCATGTAACAGATTTCTCTGCCTCTTCCATTAAAAAAGATCAAGGAGGCTCTGGCCGGGGGTATGTACCCAAGAAAAATAGGATCAACTACTCTGGACCATTGGTGCCTCCAGGTGGCAACATTGATGACATGCTCAAAGAGCATGAAAGATTAATGCAAGAAGCTTTCAGAAGTGTCAAGAAGACCAATCATAGAAACTAA 2010 0.4075 MGCICSKESSSDKDRVDEHEKENELKKSSVQLVAPNVSNAELDGNDDGGSVPHMAKSYSQIIKSCVPALSLLEDKNNNNNNNPSDVVVKSSTKGQQHRHLTCITLGAGERKPTMSRLLSVPHGPGGHVDDAWPSWLSSVAGEAIKGWIPRRADSFEKLDQIGQGAYSSVHRARDLETGKIVAMKKVRFSSSDPESVRFMAREIYILRQLDHPNVMKLEGLVTSTTSTSLYLVFEYMEHDLAGLSALSGVKFTEPQIKCFMQQLLCGLEHCHLRGVLHRDIKGSNLLIDNNGNLKIADFGLATVYNPDKKHALTSRVVTLWYRAPELLLGATDYGAGIDLWSVGCILAELLVGKPIMPGRTEVEQMHKIFKLCGSPSEDYWQRTKLPHSTSFKPQHCYRRNIFETFKSFPSSALTLVDKLLSIEPEKRGSVTSALKSETNKDAYASYVLNHVQKFGYMNLPGLQFFTTNPLPCDPSSLPKFPPTKEFDARHRDKDEMRKNNDAVKGRGPVSVLRGTGDTKGLRSHEGDLPVLGKSRSRISRVKNHLRDEGGSLHHKREATKVPLQNGYAHSTSMMHGTTTGASSTNKISDMSMKTSDLRTQSENHVTDFSASSIKKDQGGSGRGYVPKKNRINYSGPLVPPGGNIDDMLKEHERLMQEAFRSVKKTNHRN 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1571 669 Gene3D Phosphorylase Kinase; domain 1 142 237 - -
Lal23g1571 669 MobiDBLite consensus disorder prediction 600 616 - -
Lal23g1571 669 Pfam Protein kinase domain 155 436 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g1571 669 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 80 437 - -
Lal23g1571 669 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 463 663 - -
Lal23g1571 669 SUPERFAMILY Protein kinase-like (PK-like) 149 436 IPR011009 -
Lal23g1571 669 PANTHER CELL DIVISION PROTEIN KINASE 80 437 - -
Lal23g1571 669 PANTHER CELL DIVISION PROTEIN KINASE 463 663 - -
Lal23g1571 669 CDD STKc_CDK9_like 155 437 - -
Lal23g1571 669 MobiDBLite consensus disorder prediction 600 638 - -
Lal23g1571 669 ProSiteProfiles Protein kinase domain profile. 155 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g1571 669 ProSitePatterns Serine/Threonine protein kinases active-site signature. 275 287 IPR008271 GO:0004672|GO:0006468
Lal23g1571 669 SMART serkin_6 155 444 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g1571 669 MobiDBLite consensus disorder prediction 1 48 - -
Lal23g1571 669 MobiDBLite consensus disorder prediction 8 27 - -
Lal23g1571 669 ProSitePatterns Protein kinases ATP-binding region signature. 161 184 IPR017441 GO:0005524
Lal23g1571 669 MobiDBLite consensus disorder prediction 484 529 - -
Lal23g1571 669 Gene3D Transferase(Phosphotransferase) domain 1 238 453 - -
Lal23g1571 669 MobiDBLite consensus disorder prediction 484 502 - -
Lal23g1571 669 Coils Coil 648 668 - -
Lal23g1571 669 MobiDBLite consensus disorder prediction 74 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1571 Lal-Chr23 15707675 15717702 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1571 147 504 Core Cell Cycle Gene Families AT5G10270 46.917 1.66e-111 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Lal23g1571 Pkinase 6e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1571 K08819 - gmx:100791743 798.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0048 15 354891 358492 Lal23g1571 23 15707675 15717702 LSH