Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1570 ATGAGTTGTTGGAATAGTAATAGGAGTAATCCATCGCTGCATGGAGTTACAAACTCAAATAAGAAGTTGAAGGGAGTTCGACGTAGAAAATGGGGCAAATGGGTATCCGAGATTCGTGTTCCGGGAACACAAGAACGTCTCTGGTTAGGGACTTATTCTACGGCGGAGGCTGCGGCGGTGGCACATGACGTGGCAGTATATTGTCTGAGAAAGCCTTCTTCATTGGACAAACTCAACTTTCCTGAGACATTGTCTTCATATGATGTACTAAAAAGAGATGACATGTCACCAAACTCAGTTCAAAAGGTTGCTTCCGATGTTGGAATGGATGTTGATGCCAGAAACATTGCAGGAATGACAACAGAACAAAATAACAATTATGACAAGAAAAGTAGTGATTTGTTTTGGTGGGAAGATTTGGGTGATATTTCTCAAGGAAGTGAAGAAGACTGTGGTAGAGAAGGGGAGGCCTTGAACATTTCAGTAGAAGATTATCTTTAA 501 0.4152 MSCWNSNRSNPSLHGVTNSNKKLKGVRRRKWGKWVSEIRVPGTQERLWLGTYSTAEAAAVAHDVAVYCLRKPSSLDKLNFPETLSSYDVLKRDDMSPNSVQKVASDVGMDVDARNIAGMTTEQNNNYDKKSSDLFWWEDLGDISQGSEEDCGREGEALNISVEDYL 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1570 166 Gene3D AP2/ERF domain 21 83 IPR036955 GO:0003700|GO:0006355
Lal23g1570 166 ProSiteProfiles AP2/ERF domain profile. 22 81 IPR001471 GO:0003700|GO:0006355
Lal23g1570 166 SMART rav1_2 22 87 IPR001471 GO:0003700|GO:0006355
Lal23g1570 166 MobiDBLite consensus disorder prediction 1 19 - -
Lal23g1570 166 SUPERFAMILY DNA-binding domain 22 81 IPR016177 GO:0003677
Lal23g1570 166 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 15 163 - -
Lal23g1570 166 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF020 15 163 - -
Lal23g1570 166 MobiDBLite consensus disorder prediction 1 21 - -
Lal23g1570 166 CDD AP2 21 83 IPR001471 GO:0003700|GO:0006355
Lal23g1570 166 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700|GO:0006355
Lal23g1570 166 PRINTS Ethylene responsive element binding protein signature 45 61 IPR001471 GO:0003700|GO:0006355
Lal23g1570 166 Pfam AP2 domain 22 71 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1570 Lal-Chr23 15706196 15706696 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1570 19 166 AP2-EREBP Transcription Factor Family AT1G22810 49.324 2.22e-40 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal23g1570 AP2 1.3e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1570 - - gmx:100816257 204.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal16g0066 16 396090 396608 Lal23g1570 23 15706196 15706696 LSH