Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1560 ATGTTTCAAGAGGAAGGTTCATCTTCTGTAACTTCTTCACCTTTGCAATTCTTCTCTATGATGTCAGTTTCACCCAGCATAGGTTCTCCATACACATGGCTTAGAGAAATGAAATCCGAGGAAAGGGGTTTGTGTTTGATCCATTTATTGCTCACTTGTGCAAAGCATGTAGCTGCTGGTAGTCTTGAAAATGCAAACATCACACTTGAGCAAATTTCTCAGCTCGCCTCGCCCGATGGCGATACTATGCAGCGAATTGCTACTTACTTTACTGAAGCACTCGCTGATCGGATGCTGAAATCGTGGCCTGGTATCCACAGGGCACTCAATTCTACCAAGATGGTTATGGTTTCGGAAGAAATTCTTGTCAAGAAGCTCTTCCTCGAGTTGTTCCCGTTCTTGAAAATAGCGTATATTCTGACAAATCAGGCTATTGTTGAAGTGATGGAAGGGGAGAAAATGGTACATATAATTGATCTCAATGCCTCCGAGCCTATGCAGTGGATTGCTCTCCTCCAAGTCTTGAATGCACGTCCAGAAGGCCCTCCACATTTGAGAATTACTGGTGTTCATCAGCAGAAAGAAATTCTCGATCAGATGGCTCATAAACTTACTGAAGAAGCAGAAAAGTTGGATATCCCGTTCCAATTCAATCCTGTACTTAGCAAATTAGAAAATCTTGATTTCGACAGACTTCGAGTGAAAACCGGGGAGGCCCTAGCAATAAGTTCTTTTCTGCAATTGCATTCCCTTTTGGCCTTGGATGATGAAGCCTTGCGAAGAAAATCGCCTCTCATGTCAAAAAATTCACTGCAAAAGGTTGTGCTGATGAACCAAAGCACATTGGATGAATTGTCCGAGAAAGTTATGGGTAATGGCTATAGCCCAAGCCCTGACTCAACCTCATCGTCACCTGTGTCTTTAACCGCTTCAATTAATTCGGAGAGCTTTCTTAATGCCTTGTGGGCATTATCACCGAAGGTCATGGTTGTAACAGAACAAGACTTCAATCATAATGGTTCAACATTGATGGAGAGACTACTAGAAGCGCTATATTCTTATGCAGCATTGTTTGATTGTTTGGAGTCCACTGTCTCAAGAGCGTCATTGGAGAGATTCAAGGTGGAGAATATGCTTTTCGGCAAAGAAATCAAGAACATTATTGCCTGTGAAGGGTCTGAAAGAAAGGAAAGACATGAGAAGCTGGATAAGTGGTTCCAAAGACTTGATTCGACCGGGTTTGGCAACGTGCCTTTAAGCTATTTTGGTATGTTGCAGGCAAGGAGGTTTCTACAGAGCTATGGTTGTGAGGGATATAGGATGAAGGAAGAAAATGGTTCTGTAGTAATTTGCTGGCAGGACCGGTCGTTGTATTCGATATCGGCTTGGAGATCAAGAAAGTAA 1404 0.4274 MFQEEGSSSVTSSPLQFFSMMSVSPSIGSPYTWLREMKSEERGLCLIHLLLTCAKHVAAGSLENANITLEQISQLASPDGDTMQRIATYFTEALADRMLKSWPGIHRALNSTKMVMVSEEILVKKLFLELFPFLKIAYILTNQAIVEVMEGEKMVHIIDLNASEPMQWIALLQVLNARPEGPPHLRITGVHQQKEILDQMAHKLTEEAEKLDIPFQFNPVLSKLENLDFDRLRVKTGEALAISSFLQLHSLLALDDEALRRKSPLMSKNSLQKVVLMNQSTLDELSEKVMGNGYSPSPDSTSSSPVSLTASINSESFLNALWALSPKVMVVTEQDFNHNGSTLMERLLEALYSYAALFDCLESTVSRASLERFKVENMLFGKEIKNIIACEGSERKERHEKLDKWFQRLDSTGFGNVPLSYFGMLQARRFLQSYGCEGYRMKEENGSVVICWQDRSLYSISAWRSRK 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1560 467 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 2 466 IPR005202 -
Lal23g1560 467 Pfam GRAS domain family 46 464 IPR005202 -
Lal23g1560 467 ProSiteProfiles GRAS family profile. 37 464 IPR005202 -
Lal23g1560 467 PANTHER SCARECROW-LIKE PROTEIN 3 2 466 IPR030008 GO:0003700|GO:0005634|GO:0009739
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1560 Lal-Chr23 15651276 15652679 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1560 1 467 GRAS Transcription Factor Family AT1G50420 66.320 0.0 647
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lal23g1560 GRAS 1.5e-138 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1560 - - tcc:18589932 737.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal15g0052 15 375951 377372 Lal23g1560 23 15651276 15652679 LSH