Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1553 ATGTACGGAAAGCAAGAAAAACACACACAGTATGAACTTCAAGATGGAGCTGATATTGGTTCCTCTTTATCAAAGCTCATATTATCAAGTGGACCAAATACTCTTGACTCAATTTTCTCTCATTGCACACCAACAATTTCAAATTCAAATTCAAATTCCATATTGGAGTGCTTTGAGCCTTTGGGTTCTTCAGTATATATTCGCCAAAGGGATATCCTTCAAAAATTTTACCATGAAAGCAAGGTAAATGGATGTTTTGTCCCATATTTTTCAATGGGAAATCCAACTCTAAATTCTGTTGCATACACAAGTTCTTTGGTGAACCATTCTTGCAAGAAGAAGCAGTACCGTGGAGTGAGACAGAGACACTGGGGAAAATGGGTCGCAGAGATTAGACTCCCTCAAAATAGGATGAGAGTGTGGCTTGGAACTTATGAAACTGCTGAAGCTGCTGCTTATGCTTATGATCGTGCCGCTTATAAGCTTCGTGGAGAATATGCACGTTTGAATTTCCCCAATCTTAAGGATCCTACTACTTTAGGATTTGGAGATTCAACCAGATTGAATGCTCTCAACACTTCTGTGGATGCTAAAATTCAAGCAATTTGTTTAAAGGTGAAAAGGGAGAAAGCTAAAAAGAATGCTGCAAAGAAGCTTAAATCGGGTAATGACTCAAACAGAGACAAATCCTTCGACAAGAATGTGAACTCGTGTTCTATTTCTTCATCCATGTCACATTCCAATTTATATGATAATTGGGTAAATGAGTTGTTATTGCCTAGCCCAATTTCGGCGTCCCCGGCTTCAGGTTCGGGTTCGGGTTCTGTTTCTACAGAATATGCAATGATGGTAACAGAGGAACCAGAGTTTGAAGGATGTTCACTTGCAAGAATGCCATCCTTTGATCCTGAGTTGATTTGGGAAGTTCTAGCAAATTAG 939 0.393 MYGKQEKHTQYELQDGADIGSSLSKLILSSGPNTLDSIFSHCTPTISNSNSNSILECFEPLGSSVYIRQRDILQKFYHESKVNGCFVPYFSMGNPTLNSVAYTSSLVNHSCKKKQYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYETAEAAAYAYDRAAYKLRGEYARLNFPNLKDPTTLGFGDSTRLNALNTSVDAKIQAICLKVKREKAKKNAAKKLKSGNDSNRDKSFDKNVNSCSISSSMSHSNLYDNWVNELLLPSPISASPASGSGSGSVSTEYAMMVTEEPEFEGCSLARMPSFDPELIWEVLAN 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1553 312 PRINTS Ethylene responsive element binding protein signature 116 127 IPR001471 GO:0003700|GO:0006355
Lal23g1553 312 PRINTS Ethylene responsive element binding protein signature 138 154 IPR001471 GO:0003700|GO:0006355
Lal23g1553 312 SUPERFAMILY DNA-binding domain 115 172 IPR016177 GO:0003677
Lal23g1553 312 SMART rav1_2 115 178 IPR001471 GO:0003700|GO:0006355
Lal23g1553 312 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 9 312 - -
Lal23g1553 312 ProSiteProfiles AP2/ERF domain profile. 115 172 IPR001471 GO:0003700|GO:0006355
Lal23g1553 312 Pfam AP2 domain 115 165 IPR001471 GO:0003700|GO:0006355
Lal23g1553 312 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 9 312 - -
Lal23g1553 312 Gene3D AP2/ERF domain 114 173 IPR036955 GO:0003700|GO:0006355
Lal23g1553 312 CDD AP2 114 174 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1553 Lal-Chr23 15612351 15613289 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1553 17 312 AP2-EREBP Transcription Factor Family AT1G64380 48.328 5.41e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal23g1553 AP2 4.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1553 - - lang:109331119 430.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1553 23 15612351 15613289 Lal23g1553 23 15612351 15613289 ECH
Lal16g0077 16 468760 469740 Lal23g1553 23 15612351 15613289 LSH