Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1549 ATGGACACTTACACTCGCCACGTTACACACACCAAACTTGTTACACAATATGACTTTCTCAACAACCCTTCATACCCAAAGCTGCTCAGAATAACCGTCACTGACACCGACGCCACCGACTCCTCTAGTGATGAAGAACATGAATGCTCCACGCGCCACCGTCCACCCACAAAGTTTGTCAATGAGATTATTTTTAAGCCGTCTGAGAAAGACGGCGTCGTTTCAAGGAAGAGAAGCAGTGTCAAGCCTAAGTCCACTGCTGTTGGAAAACCAAGACTTCCGGCGAGTAGGCAACCGGAGAAGCTGACCTCCGGCAAGAAATACCGAGGAGTGAGGCAGAGACCGTGGGGAAAATGGGCGGCGGAAATAAGAGACCCAGTCCGGCGCGTGAGGTTATGGTTGGGGACCTATAACACTGCTGAGGAAGCTGCCATTGTGTACGACAACGTTGCCATTAAGTTACGTGGACCACACGCGCTGACAAATTTCATAACTCCGCCGCCTGAAGATAAAAATCCGTCGACCGTTACCCACAGTGATATATCTATGGAAGAATCTTATTCACAACATGGTTTGTTTTCTCCCACTTCCGTTCTACACCGTTGTTCCTCATCGGAAGAAGCTGATTCAGTAACCATGAATGAAGTATTCGAAAATTGTTGTGTTTCGGAGAATTTGTTTGAAACCGAAAATCTTAACTTTGAGTCTCAAATTCCAAACAACACGGTATTTGATATTGAAGGTTCCTTGTTGACACATGATATTTTGAACAACAATTTTAACATTGAGGAAACTATATTCCTGAACGATGATTGTAGGAATGATATGTTTCTCACTGCTTGTGAAGATTTGCAATTGGACTTAGATTTAAAGGGATGGCATTATAAAGATGATGAATTTTTCCAAGACATTAATGATGACATGTTTGAATCAGATTCACTTCTTGCTAAGTGA 954 0.4329 MDTYTRHVTHTKLVTQYDFLNNPSYPKLLRITVTDTDATDSSSDEEHECSTRHRPPTKFVNEIIFKPSEKDGVVSRKRSSVKPKSTAVGKPRLPASRQPEKLTSGKKYRGVRQRPWGKWAAEIRDPVRRVRLWLGTYNTAEEAAIVYDNVAIKLRGPHALTNFITPPPEDKNPSTVTHSDISMEESYSQHGLFSPTSVLHRCSSSEEADSVTMNEVFENCCVSENLFETENLNFESQIPNNTVFDIEGSLLTHDILNNNFNIEETIFLNDDCRNDMFLTACEDLQLDLDLKGWHYKDDEFFQDINDDMFESDSLLAK 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1549 317 Pfam AP2 domain 107 156 IPR001471 GO:0003700|GO:0006355
Lal23g1549 317 CDD AP2 106 163 IPR001471 GO:0003700|GO:0006355
Lal23g1549 317 SMART rav1_2 107 170 IPR001471 GO:0003700|GO:0006355
Lal23g1549 317 PRINTS Ethylene responsive element binding protein signature 108 119 IPR001471 GO:0003700|GO:0006355
Lal23g1549 317 PRINTS Ethylene responsive element binding protein signature 130 146 IPR001471 GO:0003700|GO:0006355
Lal23g1549 317 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 4 312 - -
Lal23g1549 317 MobiDBLite consensus disorder prediction 71 108 - -
Lal23g1549 317 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 4 312 - -
Lal23g1549 317 SUPERFAMILY DNA-binding domain 107 163 IPR016177 GO:0003677
Lal23g1549 317 ProSiteProfiles AP2/ERF domain profile. 107 164 IPR001471 GO:0003700|GO:0006355
Lal23g1549 317 Gene3D AP2/ERF domain 106 165 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1549 Lal-Chr23 15585090 15586043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1549 4 200 AP2-EREBP Transcription Factor Family AT4G27950 48.131 1.32e-45 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal23g1549 AP2 3.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1549 - - lang:109330775 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1549 23 15585090 15586043 Lal23g1549 23 15585090 15586043 ECH
Lal16g0082 16 494329 495387 Lal23g1549 23 15585090 15586043 LSH
Lal23g1549 23 15585090 15586043 Lal16g1169 16 7995525 7996514 PCT