Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1546 ATGGGTAACAAGTACAGCTCCACCAACCAACTCAATTCTGAACCTCTCTCACCCAAATCCAATCCTGATTCTAATCCAAATCTCGATCCCAATCCTATACCCGATCCTAATCCCAATGACATCTCAGTCCTCCCTCCTTTTCCCAAACCCATACCTTTCCCATCCTATGCCACATCTTCCATGGGTCGCATCTTGGGCAAGCCCATGGAAGATGTGCGCTCCACTTACACTTTCGGCCGTCAAATCGGTCAAGGTCAATTCGGGGTGACTCATCAAGTCACCCACAAATTGACCAAAGAAAAATTCGCGTGTAAGTCAATAGCCACACGCAAACTCATCCACGACGATGACATTGAAGATATTCGCCGCGAAGTTCAGATTATGCACCACCTCACCGGCCACCGACACGTTGTCGAGCTCAAGGCTGCTTACGAGGATCGTTATTCTGTTAAACTCATCATGGAGCTTTGCGCTGGTGGCGAACTCTTTGGAAGGATTATTGCTAAGGGTTATTATTCGGAACGTGCGGCGGCGGATTTGTGCCGCCAGATCGTGACGGTGGTGCATGATTGTCATAATATGGGGGTTATGCATCGGGATCTGAAGCCTGAGAATTTTTTGTTCCTTAGTAACGATGAGAGTTCACCTCTTAAATTAACTGATTTTGGTCTCTCAGTTTTTTTCAAACCAGGAGATGTTTTTAAAGATTTAGTGGGAAGTGCTTATTATGTTGCTCCTGAGGTGCTTCTGAGAAGTTATGGACCTGAAGCTGATATTTGGAGTGCTGGTGTTATCCTGTACATTCTCCTCTCTGGCTTCCCTCCCTTCTGGGCAGAAAGTGAAAAGGGTATCTTCGATGCTATTCTCCTTGGACATATTGATCTTGAATCAGATCCTTGGCCTTCCATATCAACTAATGCGAAAGATCTGGTCAAGAAAATGCTACAACGTAGCCCTAAAAAACGGCTTTCAGCAGTTGATGTCCTAAATCATCCTTGGATGAGAGAAGATGGAGCATCTGATAAGCCTCTTGACAATGCTGTTTTATCCAGACTGAAACAATTCACGGCAATGAACAGGCTAAAGAAAGTAGCTCTGAAGTTTATTGCTGAAAATCTTTCCGAAGAGGAAATAATTGGCTTGAAGGAAATGTTCAAGTCCATGGACACAGATAATAGTGGAACGGTCACTTTTGAAGAGCTGAAAGCTGGTCTCCTGAAACTGGGTACTAAGATTTCTGAGTCTGAAGTAAGGGAGTTCATGAAAGCGGCTGATGTAGATGGAAATGGAACCATTGATTATATTGAATTTATAACAGCTACCATGCACATAAATAGAGTGGAAAGAGAGGACCACCTATATAAAGCCTTCGAATATTTTGACAGGGATGGTTCCGGTTTACCAGAATTGCCCTCTTACATGTTGGCTTCCCATTTTTGTCATAGGTACATCACACTGGAAGAATTAGAATCTGCACTTACGAAGTATAACATGGGTGATACGAAAACAATGAAAGAGATCATTGCTGAAGTTGACACGAACAATGATGGAAGGATCAACTATGACGAGTTTGTAGCCATGATGAGGAAAGGTAACCCAGATTCACACATATTGAAGTTGAGCATAAATTGA 1632 0.432 MGNKYSSTNQLNSEPLSPKSNPDSNPNLDPNPIPDPNPNDISVLPPFPKPIPFPSYATSSMGRILGKPMEDVRSTYTFGRQIGQGQFGVTHQVTHKLTKEKFACKSIATRKLIHDDDIEDIRREVQIMHHLTGHRHVVELKAAYEDRYSVKLIMELCAGGELFGRIIAKGYYSERAAADLCRQIVTVVHDCHNMGVMHRDLKPENFLFLSNDESSPLKLTDFGLSVFFKPGDVFKDLVGSAYYVAPEVLLRSYGPEADIWSAGVILYILLSGFPPFWAESEKGIFDAILLGHIDLESDPWPSISTNAKDLVKKMLQRSPKKRLSAVDVLNHPWMREDGASDKPLDNAVLSRLKQFTAMNRLKKVALKFIAENLSEEEIIGLKEMFKSMDTDNSGTVTFEELKAGLLKLGTKISESEVREFMKAADVDGNGTIDYIEFITATMHINRVEREDHLYKAFEYFDRDGSGLPELPSYMLASHFCHRYITLEELESALTKYNMGDTKTMKEIIAEVDTNNDGRINYDEFVAMMRKGNPDSHILKLSIN 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1546 543 Gene3D Phosphorylase Kinase; domain 1 78 160 - -
Lal23g1546 543 ProSitePatterns EF-hand calcium-binding domain. 512 524 IPR018247 -
Lal23g1546 543 ProSiteProfiles EF-hand calcium-binding domain profile. 412 447 IPR002048 GO:0005509
Lal23g1546 543 PANTHER SERINE/THREONINE-PROTEIN KINASE 28 534 - -
Lal23g1546 543 Gene3D Transferase(Phosphotransferase) domain 1 161 341 - -
Lal23g1546 543 SUPERFAMILY Protein kinase-like (PK-like) 73 347 IPR011009 -
Lal23g1546 543 Gene3D - 342 534 - -
Lal23g1546 543 Pfam EF-hand domain pair 381 441 IPR002048 GO:0005509
Lal23g1546 543 ProSitePatterns EF-hand calcium-binding domain. 425 437 IPR018247 -
Lal23g1546 543 MobiDBLite consensus disorder prediction 1 46 - -
Lal23g1546 543 CDD STKc_CAMK 76 333 - -
Lal23g1546 543 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 1 28 534 - -
Lal23g1546 543 MobiDBLite consensus disorder prediction 25 46 - -
Lal23g1546 543 Pfam Protein kinase domain 76 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g1546 543 CDD EFh 381 440 IPR002048 GO:0005509
Lal23g1546 543 ProSitePatterns EF-hand calcium-binding domain. 389 401 IPR018247 -
Lal23g1546 543 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Lal23g1546 543 ProSitePatterns Protein kinases ATP-binding region signature. 82 105 IPR017441 GO:0005524
Lal23g1546 543 ProSiteProfiles Protein kinase domain profile. 76 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g1546 543 SMART efh_1 380 408 IPR002048 GO:0005509
Lal23g1546 543 SMART efh_1 416 444 IPR002048 GO:0005509
Lal23g1546 543 SMART efh_1 503 531 IPR002048 GO:0005509
Lal23g1546 543 ProSiteProfiles EF-hand calcium-binding domain profile. 499 534 IPR002048 GO:0005509
Lal23g1546 543 SUPERFAMILY EF-hand 361 530 IPR011992 -
Lal23g1546 543 MobiDBLite consensus disorder prediction 1 24 - -
Lal23g1546 543 ProSiteProfiles EF-hand calcium-binding domain profile. 376 411 IPR002048 GO:0005509
Lal23g1546 543 SMART serkin_6 76 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g1546 543 Pfam EF hand 504 530 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1546 Lal-Chr23 15561961 15567065 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1546 62 534 EF-hand Containing Proteins AT4G23650 74.262 0.0 747
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lal23g1546 Pkinase 2.6e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1546 K13412 - gmx:100817321 800.045
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1546 23 15561961 15567065 Lal23g1546 23 15561961 15567065 ECH
Lal15g0059 15 421528 427319 Lal23g1546 23 15561961 15567065 LSH