Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1545 ATGGAAAACAAAAACATATTGTTATCAGCACTAAGTGTAGGGGTAGGATTGGGTATTGGATTGGCCTCTGGACAACGCGCTTCCAAATGGGGAAAAGGAAACAACAATAAAACTTATTCCATTACTCCTCACAATATAGAACAAGAAATGCTACGTTTAGTTGTTGATGGCAGAAATACCAATCTCACTTTTGATCATTTCCCTTATTATCTCAGTGAGCAGACACGGGTGTTGCTGACAAGTGCTGGTTATGTCCATTTAAAACATGCTGAAGTTTCTAAATATACACGAAATCTTGCTCCTGCGAGCCGGACTATTCTTCTCTCAGGGCCAGCAGAACTTTACCAACAGGTGCTTGCCAAGGCTTTAGCCCACTACTTTGAGGCCAAGTTGCTTCTATTAGATTTAACTGACTTTTCATTGAAGATTCAGAATAAATACGGTTCTTCTGGTAACAAAGAATCTTGTTTCAAAAGGTCTACCTCAGAGTCAACTTTGGATCGGTTATCTGACCTGTTTGGATCATTTTCAATCTTTCCTAACAGGGAGGAGTCTAAAGGAAATATGCTTAGGCAAAGCAGTGGAGTGGACCTCCGATCAATGGAAGCCGAAGGATCTTGTAATCCTTCTAAGCTTCGTAGGAATGTGTCTGCCTCTGCAAATATGAGTAGCCTTGCTTCACAAAGCAATCATACAAATTCAGCTCTTATGAAGCGCACAGCCATCTGGTCCTTTGATGAAAAGCTTCTTATACAAACTCTTTACAAGGTTCTGGTTTTTGTATCAAAAACCTATCCCATTGTGCTATATTTGCGGGATGTTGATAAGCTGTTAAATAGATCACAAAGGATATATAACCTTTTCCAGAAAATGTTGAAGCAAATATCCGGACCAATTTTGATTCTTGGTTCACGAGTTCAGGATTACGGCGATGACTACAAACAAGTGGATGAGAGTCTAAGTTCCCTCTTCCCTTACAACATAGAAATCAAGCCTCCAGAAGATGAATCGCAGCTTGTTAGCTGGAAATCTCAGTTTGAAGAGGATATGAAGATGATACAAGTTCAGGATAACAGGAACCATATCATGGAAGTGCTTTCAGCCAATGATCTTTATTGTGATGACCTGGATCGCGTCTGCGTGGCAGACACAATGGTTCTTAGTAACTATATACAAGAGATTGTCGTCTCCGCAATTTCCAATCATTTAATGAATAACAAAGATCCTGAATACAGAAATGGAAAACTTGTTATTTCATGCAATAGTTTATCCCATGCATTGGATATATTCCAGGAGGGAAAATTCAGTGGAAGAGATACATTAAAATTAGAAGCTCAACGAGGTGTAGCACCCGAGCAAACAGAGGATGGAGCTGTTGTGAAACCTGAAGCAAAGGCTGAAAATCCTGCTCCTGGGACAAAGGCTGAACCTGAAATATCAACTTCCGAGGGAAAAACTGAAGTTCCACCAGATAATGAGTTTGAGAAGCGAATAAGGCCTGAGGTAATACCCGCAAATGAGATTGGTGTAACATTCTCTGATATTGGTGCTTTAGATGACACCAAAGAATCCCTTCAAGAACTGGTAATGCTTCCTCTGCGGAGGCCAGACCTTTTTGCTGGAGGCCTTTTAAGTCCTTGTAGAGGAATATTGCTATTTGGGCCTCCTGGCACAGGGAAGACAATGCTGGCAAAGGCCATTGCAAACGAGGCTGGAGCAAGTTTCATAAATGTATCCATGTCTACCATCACTTCTAAATGGTTTGGTGAGGATGAGAAGAATGTCCGTGCTTTATTCACACTTGCAGCCAAGGTCTCTCCTACCATTATATTTGTAGATGAGGTTGATAGCATGCTTGGGCAACGGTCCAGAGTCGGAGAGCATGAAGCCATGCGCAAAATTAAGAATGAATTTATGTCCCATTGGGATGGGCTTATGACAAACAAAGGGGAGCGTATTCTTGTTCTTGCTGCAACCAATAGGCCCTTTGACCTGGATGAAGCGATTATAAGGCGATTTGAAAGGAGAATTATGGTGGGGCTACCATCTGTGGAGAACAGAGAAAAGATTTTGAGGACTCTTTTGTCAAAAGATAAGGTGGACGAGGGGCTTAATTTTAAGGAACTCGCAACTATGACAGAAGGATATACTGGAAGTGATCTTAAGAACTTCTGTACAACTGCTGCTTATAGACCTGTTAGAGAGTTGATTCAGCAAGAGTTACTAAAGGATAAGAAGAAAAAGCAGAAAGATGCTGAAGAACAAAATAACAATGTCCAAGGAGATCTGAATACAGAAGAGGAATTTAAGCAAGAAAGAGAAATTAACCTTAGGCCTTTGAATATGCAGGACTTCAAAGAAGCAAAGAATCAGGTTGCTGCAAGCTATGCAGCTGAAGGGGCTGGAATGAATGAATTGAAGCAGTGGAATGAGTTGTATGGGGAAGGGGGTTCTAGGAAGCAAGAGCAGTTATCTTACTTCCTATGA 2487 0.4113 MENKNILLSALSVGVGLGIGLASGQRASKWGKGNNNKTYSITPHNIEQEMLRLVVDGRNTNLTFDHFPYYLSEQTRVLLTSAGYVHLKHAEVSKYTRNLAPASRTILLSGPAELYQQVLAKALAHYFEAKLLLLDLTDFSLKIQNKYGSSGNKESCFKRSTSESTLDRLSDLFGSFSIFPNREESKGNMLRQSSGVDLRSMEAEGSCNPSKLRRNVSASANMSSLASQSNHTNSALMKRTAIWSFDEKLLIQTLYKVLVFVSKTYPIVLYLRDVDKLLNRSQRIYNLFQKMLKQISGPILILGSRVQDYGDDYKQVDESLSSLFPYNIEIKPPEDESQLVSWKSQFEEDMKMIQVQDNRNHIMEVLSANDLYCDDLDRVCVADTMVLSNYIQEIVVSAISNHLMNNKDPEYRNGKLVISCNSLSHALDIFQEGKFSGRDTLKLEAQRGVAPEQTEDGAVVKPEAKAENPAPGTKAEPEISTSEGKTEVPPDNEFEKRIRPEVIPANEIGVTFSDIGALDDTKESLQELVMLPLRRPDLFAGGLLSPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRSRVGEHEAMRKIKNEFMSHWDGLMTNKGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREKILRTLLSKDKVDEGLNFKELATMTEGYTGSDLKNFCTTAAYRPVRELIQQELLKDKKKKQKDAEEQNNNVQGDLNTEEEFKQEREINLRPLNMQDFKEAKNQVAASYAAEGAGMNELKQWNELYGEGGSRKQEQLSYFL 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1545 828 Gene3D - 509 796 IPR027417 -
Lal23g1545 828 Pfam ATPase family associated with various cellular activities (AAA) 550 680 IPR003959 GO:0005524|GO:0016887
Lal23g1545 828 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 510 750 IPR027417 -
Lal23g1545 828 Gene3D - 682 790 - -
Lal23g1545 828 Coils Coil 738 762 - -
Lal23g1545 828 Pfam AAA+ lid domain 704 739 IPR041569 -
Lal23g1545 828 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 828 - -
Lal23g1545 828 CDD AAA 548 681 - -
Lal23g1545 828 SMART AAA_5 546 683 IPR003593 -
Lal23g1545 828 MobiDBLite consensus disorder prediction 746 770 - -
Lal23g1545 828 ProSitePatterns AAA-protein family signature. 653 672 IPR003960 GO:0005524|GO:0016887
Lal23g1545 828 MobiDBLite consensus disorder prediction 445 499 - -
Lal23g1545 828 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 828 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1545 Lal-Chr23 15555355 15561090 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1545 510 740 Calmodulin-binding Proteins AT3G56690 38.462 9.21e-42 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1545 - - gmx:100783137 1296.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1545 23 15555355 15561090 Lal23g1545 23 15555355 15561090 ECH