Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1541 ATGGAGGCAAGGGAAGTTGAGAAGAAAGCAAAGGAAGCATTTTTCGACGATGATTTCAGCGCCGCCGTTGATCTTTACTCTGAAGCAATTCTTTTGGATCCTAACAACGCCGATCTCTTTGCCGATAGAGCTCAAACTCATATTAAACTCAATTGCTTCACTGAAGCCATTTCCGATGCCAACAAAGCTATTCATTTCAACCCTTCTTTGTCTAAGGCCTATCTTCGTAAAGGGATTGCTTGTATTAAGCTTGAAGAGTATCATACTGCCAAATTGGCACTACAAACTGGTGCCTCTTTTGCACCAAATGATTCAAGATTCGCCAAATTGATCCATGAATGTGATCGTTATATTGCAGCGTTTGTGATTGTTTTCTTGTATGATGTGTTTGTGATCTATCTTATTGTGTCAGAGGAACCAATTGGTCTTACTAGCACCTTATCACTAAATGGGCCTGTAGCAGCTGTACCACCGACTGATGGTTCCCATTTATGTGATACAAGTGCTGGAACAACTAAAGAAGCTGAAAGAGACAGTTTGGTAACCCAAACAAATGAAGTTGCGCCAACGGGACCAAAATACAGACATGAATACTACCAGAAGCCCGAAGAAGTGGTTGTCACAATATTTGCAAAAAGGATACCAGCAAAAAATGTGGTCGTTGACTTCGGTGAACAGATTCTGAGTGTTACTATTGATGTTCCTGGCCAAGGTGCCTACCATTATCAACCTCGATTGTTTGGAAAGATAGTACCTGATAAGTGCAGAATTGAGGTGTTGTCAACTAAAGTTGAAATCCGTCTTGCAAAAGCTGAAGCTATTAATTGGACATCTCTAGAATATAGCAAAGATGTGCTTCCCCAAAAAATAACTACTCCCACAGTTCAATCTGAAAGGCCTACATACCCATCATCAAAGCCAAGGACAAGAGATTGGGATAAGTTGGAAGCTGAAGTGAAAAAAGAGGAGAAGGAAGAAAAGCTAGATGGGGATGCTGCCTTGAATAAATTGTTCCGTGATATTTACCAAAGTGCAGATGAGGACATGAGGAGAGCGATGAGCAAGTCTTTTTTGGAGTCAAATGGAACAGTGCTGTCAACTGACTGGAAAGAAGTGGGATCAAAGAAGGTAGAAGGCAGTCCTCCAGAGGGCATGGAATTGAAGAAATGGGAGTACTGA 1179 0.4148 MEAREVEKKAKEAFFDDDFSAAVDLYSEAILLDPNNADLFADRAQTHIKLNCFTEAISDANKAIHFNPSLSKAYLRKGIACIKLEEYHTAKLALQTGASFAPNDSRFAKLIHECDRYIAAFVIVFLYDVFVIYLIVSEEPIGLTSTLSLNGPVAAVPPTDGSHLCDTSAGTTKEAERDSLVTQTNEVAPTGPKYRHEYYQKPEEVVVTIFAKRIPAKNVVVDFGEQILSVTIDVPGQGAYHYQPRLFGKIVPDKCRIEVLSTKVEIRLAKAEAINWTSLEYSKDVLPQKITTPTVQSERPTYPSSKPRTRDWDKLEAEVKKEEKEEKLDGDAALNKLFRDIYQSADEDMRRAMSKSFLESNGTVLSTDWKEVGSKKVEGSPPEGMELKKWEY 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1541 392 MobiDBLite consensus disorder prediction 294 313 - -
Lal23g1541 392 ProSiteProfiles SGS domain profile. 301 392 IPR007699 -
Lal23g1541 392 SMART tpr_5 3 36 IPR019734 GO:0005515
Lal23g1541 392 SMART tpr_5 37 70 IPR019734 GO:0005515
Lal23g1541 392 SMART tpr_5 71 104 IPR019734 GO:0005515
Lal23g1541 392 PANTHER PROTEIN SGT1 HOMOLOG A 3 392 - -
Lal23g1541 392 SUPERFAMILY HSP20-like chaperones 180 288 IPR008978 -
Lal23g1541 392 SUPERFAMILY TPR-like 3 114 IPR011990 GO:0005515
Lal23g1541 392 Gene3D - 192 283 IPR008978 -
Lal23g1541 392 MobiDBLite consensus disorder prediction 372 392 - -
Lal23g1541 392 Gene3D Tetratricopeptide repeat domain 1 118 IPR011990 GO:0005515
Lal23g1541 392 MobiDBLite consensus disorder prediction 161 186 - -
Lal23g1541 392 MobiDBLite consensus disorder prediction 164 186 - -
Lal23g1541 392 CDD p23_CS_SGT1_like 197 280 - -
Lal23g1541 392 Pfam CS domain 195 270 IPR007052 -
Lal23g1541 392 PANTHER PROTEIN SGT1 HOMOLOG 3 392 IPR044563 GO:0051087
Lal23g1541 392 ProSiteProfiles CS domain profile. 191 280 IPR007052 -
Lal23g1541 392 Pfam SGS domain 310 390 IPR007699 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1541 Lal-Chr23 15529690 15533098 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1541 3 95 U-box Gene Family AT3G07370 31.183 2.30e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1541 K12795 - gmx:100784022 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1541 23 15529690 15533098 Lal23g1541 23 15529690 15533098 ECH