Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1524 ATGGTTATTGCTAATAATAAGGCTAGAACTAGGGCTGTAGAGAAAAATGGTCTATTAGGTCAAAATCTCACTGTTACATCATTTAGTTCCTCAACTATACCATTAGCTCCTGTTTATTACCCTACTCATGATGAGTTTAAGGATCCTTTGGAGTTTATTTACAAGATTAGACCTGAGGCTCAGAAATTTGGGATCTGTAAGATTGTTCCACCCAATAATTGGAAACCCCCTTTTGCTTTGGATCTTAATACTTTCACTTTCCCTACAAAAACACAAGCCATTCATAAGCTCCAGGCCAGGACTGCCGCGTCTGATTCCAAGACTTTTGACTTGGAGTACTATAGGTTTTTGGAGGGTCACTGTGGGAAGAAGTCCAGGAAGAGGGTCGTTTTTGAGGGGGAGGATTTGGATTTATGTAAGTTGTTTAACACGGTTAAGCGGTTTGGCGGGTATGATAAGGTTGTCGATGAAAAGAAATGGGGGGATGTTGCTCGGTTTGTTAGGCCGGCTGGGAAGGTTTCGGAATGTGCTAAGCATGTGTTATGTCAGTTGTACCGAGAGCATTTGTATGATTATGAGAATTTCAATAATAAGATGAATCAAGGGACAGTTCAGAGTTGTAAGAAAGGGGTCCAAGAGGATCGAAAGACTGATCATGGGGTAGGGTCTTTGGGTTCTGTGCCTAAGATGCATCAACGTAGTAATGATTGTTTGAAAGGTAAGATTTGTAAATTGAAGGAAGAGGAACATGATCAGATTTGTGAGCAATGCAAAAGTGGTTTGCATGGGGAAGTCATGCTTTTGTGTGATAGGTGTGATAAGGGCTGGCATATTTATTGTCTTTCCCCGCCATTGAAGCAAATTCCTCTGGGAAACTGGTATTGTTTCAACTGCTTGAGTTCTGAGAGGGAGAGCTTTGGTTTTGTGCCTGGTAAGCACTATTCGTTGGAAGCTTTTAGACGCATAGCGGACCGGTCAAGGAAGAGATGGTTTGGATCAGGACCTGTTTCGAGGGTGCAGATAGAGAAAAAGTTTTGGGAGATTGTGGAAGGATTGGTAGGCGAGGTTGAGGTTATGTACGGAAATGACTTGGATACATCTGTTTATGGGAGTGGTTTCCCACGTGCAACTGATCAGAAGTCACAATCTATTGACGAGGAGTTATGGCAAGAGTACTCAAATAACCCATGGAATCTTAATAACTTGCCTAAGTTGAAAGGCTCAATGCTTCGAGCTGTTCATCACAATATTACCGGTGTTATGGTACCCTGGTTATATATTGGGATGCTATTCTCATCCTTTTGTTGGCATTTTGAGGATCACTGCTTTTACTCCATGAATTATTTGCACTGGGGAGAGCCAAAGTGCTGGTACAGTGTTCCTGGTAGTGAGGCAAGTGCTTTTGAGAAGGTGATGAAAAGCAGTCTTCCTGATCTTTTCGATGCACAACCGGATCTTCTTTTTCAACTTGTAACCATGTTAAACCCATCAGTCCTGCAAGAAAATAAAGTTCCCGTCTACAGCATACTTCAGGAGCCTGGGAACTTTGTTATTACCTTCCCCAAATCTTACCATGGAGGTTTCAATCTTGGTTTAAATTGTGCAGAGGCAGTCAATTTTGCTCCTGCCGACTGGCTACCATATGGTGCATTTGGAGCTGATCTCTATCAGCGGTATCACAAAACTGCTGTCTTGTCTCATGAGGAGCTCCTTTGTGTAGTAGCCCAGTATGGCGATGTTGATAACAGAGGGTCTTCTTATTTAAAGAAGGAATTGTTGAGAATATTGGACAAAGAAAAATCTTGGAGAGAGAAACTGTGGAAAAATGGTATAACTAAATCTTCTCGCATGGCTCCTCGATCGTGTCCCCAGTATGTTGGAACTGAAGAGGATCCGGCATGCATTATTTGTCAGCAATATCTCTATCTTTCTGCTGTTGTGTGCAAATGCAGGCCATCGTCTTTTGTTTGTCTGGAGCATTGGGAACACCTTTGTGAGTGTAAAAATGTTAAACGACGCCTTCTCTACCGCCATTCACTTGCGGAATTGCATGACTTGACATTTTTTATGGACAAATATATTTCTGAGGACAAATCTGAGTGTAGAAGTGCAAGAAGGCAGTCTTCATGTCTGGGTCCTTTGATCAAAAAGGTAAAAGGTAGCTCCATTACTTTCACTCAACTTGCTACAGAGTGGCTTCTGCGATCCAGTATGATTCTTCAGAGTCCCTTTTCAAGTGATGCATTTTCTACGGCAATAAGGAAAGCCGAACAATTTGTTTGGGCTGGTTCTGAGATGGATTCTGTTCGGGATATGGTGAAGATTTTGATTGAAGCTCAGAAGTGGGCAGAAGGTATTAGAGATTGTGTAACAAAAATTGAGTTTTGGTTGTCCCATCAGGACTCCAGTGTGAAGAAAGTTCATTTAGAATTTGTTGATGAGTTACTGAGATTTAATCCTGCACCGTGCAATGAGCCTTGTCGTCATAAATTGAAGGAATATGCAGAAGAAGCAAGGTCATTAGCCCAGGAGATTGATACTTCTTTGTCAATCTGTTCAAAGATGTCCGAGCTGGAATTTTTGTACTCCAGAGCTCGTGGCTTACCTATCTATGTGAAAAAGATTAAGAAATTAAAACGGAAAATTTCTTCAACTAAGGCATGGCTTAATAGTGTTAGAAAGTGCATTTCAGTGAGACATCCTGTTGCATTAGAGATTGATGTTCTTTACAAGTTAAAAGCAGAGATTGTGGATCTTCAAGTTCAACTCCCTGAGATAGATGTGCTACATAATCTATTAAGTCAAGCTGAATCTTGTAGTACTCAATGTCGTGAGTTGTTAGAAGGTTCCATGAATATTAAGAATGTTGGTCTGCTGCTTAAGGAATGGGACAATTTTACAGTTGGTGTTCCAGAGTTGAAACTTTTAAGGCAATATCATACAGAGGCTGTTTCATGGGTTTCCCACTTCAATGACGTTTTAGGGAGAGTTCACATGCGGGAAGATCAACATAATGCAGTCGATAAATTGGAGTACATTTTTTATGAAGGTTTATCTTTAAAAATTCAAGTTGAAGAATTGCCATTAGTTGAGATTGAGTTAAAGAAGGCTAATTGCCGGGAAAAGGCTTTGAAGGCTTGTGATTCTAAGATGTCTTTGGAATTCATTCAGCAACTGTTGAAGGAGGCCACAATTCTACAAATTGAGGGAGAGAAACAATTCGTCAAACTATCTTGTGTGCTCGCTGTTGCCTTTCCTTGGGAGGACAGAGCTAGAGAGATTCTTTCACATAAGGCACCTATTTCTGACTTTGAGGACATGATAAGGGCTTCGGAAAACATATTTGTTATTCTTCCCTCACTCGAGAAAGTAAAGTACGCGCTATCAGAAGCCAACTCATGGTTAAGGAATACCAAGCCTTATTTAGTCTCTTCTTCTTGTGCTTCAAATTCTTTGCGGAAAGTTGAGGACTTGCAGATGTTGGTTTCTCAATCAAAGCTTCTTAAAATATCTTTGGAAGAAAGCAGGATGCTTGAATTAGTTTTGAAGAACTGCAAAACATGGGAGTATAAAGCTTGTTCTCTGCTGGATGATGCTCAATGCCTCTTTGAATTGGATAACATTGTTCACGGAATAAGCAGTGGTTTAATGTCTAAAGTCGAAGATTTAATTGTGGGAATCCAGTCTGCAATAACATCTGGCATATTACTTGGTTTTGACTTCAATGAGATTGCAAAACTTCAAGCATCTTTTTCTACACTGCAATGGTGCAGAAGAGCTCTTTCTTTCTGCAATCATTCTCCTTCTTTGGAGGATGTTTTGGAGGTTGCAGAAGGTCTACAGCATTCCTGTGTTTCCGGTGCTCTGTTGAAAGTACTGGTTGATGGGGTTAAATGGCTTAGGAGAGCGCTAGAGGGAATTTATGGACCTCACTATTCTAGAAAATGCAAGTTGACTGATGTTGAAGATATTCTTACTGATTATAAGACTATTAATATGACCTTTGCAGCAGTAAATTGTCAACTTGAAGAAGCCATTAGAAAACATAAGTTGTGGCAAGAACAAGTGCATCAAGTTTTTGGTCTAAGCCCAAGGGAACGATCTTGGTCATCATTGTTGGAGCTCAAGGAACATGGAGATACCACTGCCTTTTGTTGCTCGGAACTAGATTTGATTTTATCTGAGGTTGAGAAGGTTGAAAATTGGAAGAAACGCTGCATGGATAGCATAGGAACTTTAGTCCACAATAAGAATTCGCTGCTTGATGCGCTTCAGAAGGTTTTTGTTTTAAAAAGATTTCCTTTTCCAGACACATCTGTGTACTACATATACTTAGGAGTTAGGGCCTTGCTTGATATTTTTCAGATAGAACAGACTCTAGATAGATCATTGTTCATACATGGCACATTGCAAGGTCGAAAGGCACAAAACCTATGCATCCGCTGTTTTATTGACTCCAAAGATCAGGAATTTCTTACTTGTTCCACTTGTATGGACTGCTATCATTGGCGGTGCATTGGACTAACAACAAGGGACATAGGTTTTGAAAACTATAAGTGCCCTTATTGTGAAATTTTGATGGGTGAATCCCGTTTCAAGAATGGAGACAGCCTCCTGGGGTTCGGGAAGAAACATGTTGAATTGAAAGTTCTTACTGAACTTCTGTCTGAAGCTGAACATTTCTGTTTATGGATTGATGAAAGAGATGTTCTGAACCAACTTGTTGAGAAAGCCCTTGCATGCAAATGTTGCCTGAGAGAAATAGTGAACCTTGCATTAGCTAATGTTGACGAAGATATTAGCACGGCTTGTGAAGTTGCTGGTGTCTGTGATAAGCATGATAATAGTGACCTTGAGCTGGCTTTATCAAAAAACTTGTGGAAAATTCAAGCCAAAAGATTGCTAAGTCATGTTCGAAAGCCCACAATCCAACAAATTCAGAAGCATCTGAAAGAGGGACTGGCTATGGAAATATCACCTGAAGATCACCACATGCTGAAACTTACAAATGTTAATCACACAAGTCTGCAGTGGGCAGAACTAGCCAAAAAGGTAGCAAATGATTCTGGGGGACTTGCCCTGCATAAAGTTTTTGAACTTGTAGAGGAAGGTGGAAATTTGCTTGTTGATGTAGATGAGGAACTCCGGATATTAAGAGCTCGATGCATGCTTTATTGCATTTGCCGAAAGCCCTTTGATCCAATTCGGATGATTGCATGTGTTCATTGTAGTGAGTGGTATCACTTTGATTGCATGAAATTACCAAGCACAAGAGAGGTCTACATATGTCCTGCATGTAACCCGTGTCCCGAAGTATTGCCTACAAACCATGAGAGATTAACTAATGGTAAATTTGAGGAGCCCAAAACCCCATCTCCAAGGCATACAAACCTGAGAAAGAAACGGAGTTACAAGATGTATGAGACAGCAGGGGATCAAGATAGAGATAATAATAGTAATTATAGGTATTCAAGTGGGATAGAATTTCTAAGGTGGCAAAATCGAAAGCCTTTTAGGAGAGCAACTAAGAAACGTGTAACGGCGTTGCAGTTGTTTCATGCTGTGGCGAAGAAGTCGCATGCTAGGCTCCTTGGCTTAGATGTTGGCGATAAATATGTTGGTCTCTCTCTTTCTGACTTTCACAATCAAGTCGCTTCTCCTTTAAGTGTTCTTCTCAGGAAGAAGTCTAATATTGATTTGATGGCTTCTGATTTTGAGTGTCTGATATCTCAATATTCATTGAAGGGCTTTGTTATTGGCATCCCTTTTGATAGACATCGTGTTTCCGCTGATGCTGTGCAAGTGAAGGCCTTCATTAATGACCTCTCTAATACTAAAAGGCTGCACGGTTTACCATATACATATTGGAATGAGCGCTTCACATCTAAGAACGTGGAGTTGTTTTTAAAGCCTCTGAACTTGTATCATCCCTATCATTCCAAGACTATGCTAGACAAGTTTGCTGCTGTTGGAATACTTCAGGGGTACCTGGATTATGCTAACAAAAAGGAGGTGAAGTTGGAAATG 6027 0.4053 MVIANNKARTRAVEKNGLLGQNLTVTSFSSSTIPLAPVYYPTHDEFKDPLEFIYKIRPEAQKFGICKIVPPNNWKPPFALDLNTFTFPTKTQAIHKLQARTAASDSKTFDLEYYRFLEGHCGKKSRKRVVFEGEDLDLCKLFNTVKRFGGYDKVVDEKKWGDVARFVRPAGKVSECAKHVLCQLYREHLYDYENFNNKMNQGTVQSCKKGVQEDRKTDHGVGSLGSVPKMHQRSNDCLKGKICKLKEEEHDQICEQCKSGLHGEVMLLCDRCDKGWHIYCLSPPLKQIPLGNWYCFNCLSSERESFGFVPGKHYSLEAFRRIADRSRKRWFGSGPVSRVQIEKKFWEIVEGLVGEVEVMYGNDLDTSVYGSGFPRATDQKSQSIDEELWQEYSNNPWNLNNLPKLKGSMLRAVHHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGSEASAFEKVMKSSLPDLFDAQPDLLFQLVTMLNPSVLQENKVPVYSILQEPGNFVITFPKSYHGGFNLGLNCAEAVNFAPADWLPYGAFGADLYQRYHKTAVLSHEELLCVVAQYGDVDNRGSSYLKKELLRILDKEKSWREKLWKNGITKSSRMAPRSCPQYVGTEEDPACIICQQYLYLSAVVCKCRPSSFVCLEHWEHLCECKNVKRRLLYRHSLAELHDLTFFMDKYISEDKSECRSARRQSSCLGPLIKKVKGSSITFTQLATEWLLRSSMILQSPFSSDAFSTAIRKAEQFVWAGSEMDSVRDMVKILIEAQKWAEGIRDCVTKIEFWLSHQDSSVKKVHLEFVDELLRFNPAPCNEPCRHKLKEYAEEARSLAQEIDTSLSICSKMSELEFLYSRARGLPIYVKKIKKLKRKISSTKAWLNSVRKCISVRHPVALEIDVLYKLKAEIVDLQVQLPEIDVLHNLLSQAESCSTQCRELLEGSMNIKNVGLLLKEWDNFTVGVPELKLLRQYHTEAVSWVSHFNDVLGRVHMREDQHNAVDKLEYIFYEGLSLKIQVEELPLVEIELKKANCREKALKACDSKMSLEFIQQLLKEATILQIEGEKQFVKLSCVLAVAFPWEDRAREILSHKAPISDFEDMIRASENIFVILPSLEKVKYALSEANSWLRNTKPYLVSSSCASNSLRKVEDLQMLVSQSKLLKISLEESRMLELVLKNCKTWEYKACSLLDDAQCLFELDNIVHGISSGLMSKVEDLIVGIQSAITSGILLGFDFNEIAKLQASFSTLQWCRRALSFCNHSPSLEDVLEVAEGLQHSCVSGALLKVLVDGVKWLRRALEGIYGPHYSRKCKLTDVEDILTDYKTINMTFAAVNCQLEEAIRKHKLWQEQVHQVFGLSPRERSWSSLLELKEHGDTTAFCCSELDLILSEVEKVENWKKRCMDSIGTLVHNKNSLLDALQKVFVLKRFPFPDTSVYYIYLGVRALLDIFQIEQTLDRSLFIHGTLQGRKAQNLCIRCFIDSKDQEFLTCSTCMDCYHWRCIGLTTRDIGFENYKCPYCEILMGESRFKNGDSLLGFGKKHVELKVLTELLSEAEHFCLWIDERDVLNQLVEKALACKCCLREIVNLALANVDEDISTACEVAGVCDKHDNSDLELALSKNLWKIQAKRLLSHVRKPTIQQIQKHLKEGLAMEISPEDHHMLKLTNVNHTSLQWAELAKKVANDSGGLALHKVFELVEEGGNLLVDVDEELRILRARCMLYCICRKPFDPIRMIACVHCSEWYHFDCMKLPSTREVYICPACNPCPEVLPTNHERLTNGKFEEPKTPSPRHTNLRKKRSYKMYETAGDQDRDNNSNYRYSSGIEFLRWQNRKPFRRATKKRVTALQLFHAVAKKSHARLLGLDVGDKYVGLSLSDFHNQVASPLSVLLRKKSNIDLMASDFECLISQYSLKGFVIGIPFDRHRVSADAVQVKAFINDLSNTKRLHGLPYTYWNERFTSKNVELFLKPLNLYHPYHSKTMLDKFAAVGILQGYLDYANKKEVKLEM 2009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1524 2009 SMART cupin_9 391 557 IPR003347 -
Lal23g1524 2009 CDD ARID 105 193 - -
Lal23g1524 2009 SMART ARID_2 100 193 - -
Lal23g1524 2009 PANTHER LYSINE-SPECIFIC DEMETHYLASE LID 34 892 - -
Lal23g1524 2009 ProSitePatterns Zinc finger PHD-type signature. 1726 1766 IPR019786 -
Lal23g1524 2009 Pfam jmjN domain 37 70 IPR003349 -
Lal23g1524 2009 Gene3D - 1860 2008 IPR037027 GO:0006139
Lal23g1524 2009 SUPERFAMILY Clavaminate synthase-like 388 572 - -
Lal23g1524 2009 Hamap Putative pre-16S rRNA nuclease [yqgF]. 1861 2001 IPR005227 GO:0006364
Lal23g1524 2009 Pfam PHD-finger 253 300 IPR019787 -
Lal23g1524 2009 ProSiteProfiles Zinc finger PHD-type profile. 251 301 IPR019787 -
Lal23g1524 2009 SMART bright_3 104 198 IPR001606 GO:0003677
Lal23g1524 2009 SMART JmjN_1 35 76 IPR003349 -
Lal23g1524 2009 Pfam C5HC2 zinc finger 634 685 IPR004198 -
Lal23g1524 2009 Gene3D Cupin 297 541 - -
Lal23g1524 2009 Pfam ARID/BRIGHT DNA binding domain 119 193 IPR001606 GO:0003677
Lal23g1524 2009 PANTHER LYSINE-SPECIFIC DEMETHYLASE 34 892 - -
Lal23g1524 2009 SUPERFAMILY FYVE/PHD zinc finger 247 301 IPR011011 -
Lal23g1524 2009 ProSiteProfiles JmjC domain profile. 391 557 IPR003347 -
Lal23g1524 2009 SMART rnase_8s 1861 1965 IPR006641 GO:0006139
Lal23g1524 2009 ProSitePatterns Zinc finger PHD-type signature. 254 298 IPR019786 -
Lal23g1524 2009 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 296 IPR013083 -
Lal23g1524 2009 Pfam Holliday junction resolvase 1862 1998 IPR005227 GO:0006364
Lal23g1524 2009 CDD PHD_RSF1 254 298 - -
Lal23g1524 2009 ProSiteProfiles ARID domain profile. 103 197 IPR001606 GO:0003677
Lal23g1524 2009 SUPERFAMILY FYVE/PHD zinc finger 1477 1524 IPR011011 -
Lal23g1524 2009 MobiDBLite consensus disorder prediction 1781 1802 - -
Lal23g1524 2009 Pfam JmjC domain, hydroxylase 424 540 IPR003347 -
Lal23g1524 2009 SUPERFAMILY Ribonuclease H-like 1862 2000 IPR012337 -
Lal23g1524 2009 SUPERFAMILY FYVE/PHD zinc finger 1720 1774 IPR011011 -
Lal23g1524 2009 Pfam PLU-1-like protein 906 1195 IPR013637 -
Lal23g1524 2009 Pfam PLU-1-like protein 1149 1405 IPR013637 -
Lal23g1524 2009 Gene3D Cupin 18 133 - -
Lal23g1524 2009 CDD YqgF 1863 1998 IPR005227 GO:0006364
Lal23g1524 2009 TIGRFAM RNAse_H_YqgF: putative transcription antitermination factor YqgF 1864 1998 IPR005227 GO:0006364
Lal23g1524 2009 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1467 1531 IPR013083 -
Lal23g1524 2009 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1712 1768 IPR013083 -
Lal23g1524 2009 ProSiteProfiles JmjN domain profile. 36 77 IPR003349 -
Lal23g1524 2009 SUPERFAMILY ARID-like 86 208 IPR036431 GO:0003677
Lal23g1524 2009 SMART PHD_3 253 299 IPR001965 -
Lal23g1524 2009 SMART PHD_3 1725 1767 IPR001965 -
Lal23g1524 2009 SMART PHD_3 1478 1524 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1524 Lal-Chr23 15395610 15413726 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1524 301 695 JUMONJI Transcription Factor Family AT1G08620 40.046 2.26e-91 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Lal23g1524 PLU-1 6.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1524 K11446 - gmx:100789512 2931.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1524 23 15395610 15413726 Lal23g1524 23 15395610 15413726 ECH