Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1523 ATGGGTAGAAGCAAGTTTGAGGCATGGAAATGCATGAACAAGTTTCAGTGCTGTGTGAACCTGTCACCACAACCACACTACCCTTCCATGACAAGGTACCCCAAAGGCACAAAGAAGGAGGTGGTGGTAGTGGAAAAACCAGGATCAGAATCAAAAGCTGTTTTTAGTGTTATGGGAATGACATGTAGTGCTTGTGCTGGATTTGTTGAGAAAGCTATAAAGCACTTACCAGGGATTAGAGAGGCCTTTGTTGATGTCTTGAATGATAAAGCCTTGGTTCTATACCACCCTGCTATGGTTAACAAGGAGAGAATATGTGAGGCCATTGAAGATGCTGGATTTGAATCCAAGCCCATTGATGAAGAATCCAATGACACCTCTTCCCAAATATGTAGAATACACATTAAGGGCATGACATGTACTTCTTGCTCCTCCACTGTTGAATCAGCTCTACAAACCATTCATGGGGTGCAGAAAGCAAGAGTGGCCTTAGCAACTGAAGAAGCAGAAATCTGTTATGACCCTAACATTGTGAGCCACAACCAGCTAATGGAAACTATAGGAGATGTTGGGTTTGAAGCCATATTAATAAGCACAGGGGAACACATAAGCAAGATAGAGTTCAAAATTGTTGGCATTCTAAATGAGCAATCAATCAGTGCTATTGAACATTCTCTCAAGGCACTAGCAGGTGTTGAAATTATAGACATATATCCACACATTAATAAAATTACCATAACTTATAAACCATATATGACAGGACCTAGAACCTTTATACAAGTTATAGAATCTACTGGATCAGCTTGTTTTAGAGCAGTGATATTTCCAAATAAAGGAGGAAGAGAAACACATAGACAAGAGGAAATTAAAAGATACTTCAAATTCTTCATATGGAGTTTAGCTTTAACAATTCCTGTTTTTTTAACATCCATGGTACTTATGTATATACCTGGAGTTAAACATGTTCTAGACATGAAAGTTGTTAATATGCTGAACATTGGATTGCTCTTGAGGTGGGAGTTTTGTACTCCAGTGCAGTTTATAATAGGCATGAGATTCTACATTGGTTCCTATAAAGCATTAAGAAACGGTTCTGCTAACATGGATGTTTTGGTTGCCTTAGGAACCAATGCAGCATATTTCTATTCTGTCTATGTTGTAGCAAGAGCAGCTTTCTCTAAAGACTTTAAAGGCAGTGATTTTTTTGAGACTAGTGCTATGCTTATTTCATTTATTCTACTTGGCAAGTATTTGGAAGTGTTGGCAAAAGGGAAAACATCTCAAGCAATTGCAAAGCTTATGGACTTGACACCTGACACTGCAACCCTTTTAACTCAAGATGATGAAGGAAATGTGATTAGTGAACAACAAATTGATAGCAGGTTGGTACACAAGAATGATGTGATCAAAATTGTGCCCGGCGCAAAAGTAGCATCAGATGGTCTTGTCATATGGGGAAAAAGCCATATAAATGAGAGCATGATAACTGGAGAGGCTACACCGGTGGCTAAGAGGGAGGGTGATATGGTGATTGGAGGCACTGTGAATGAGAATGGGGTTTTGCATGTCAAGGTAACAAGAGTTGGATCAGAAAGTGCACTCTCCCAAATTGTTAGACTAGTTGAGTCTGCCCAGATGGCTAAGGCCCCAGTGCAGAAACTTGCAGACCACATTTCTAAATATTTTGTTCCTTTGGTCATTTTGCTTTCCATTTCAACTTGGTTTTCATGGTTTTTAGCAGGACAATTACATGCATACCCAAAATCTTGGATACCATCCTCTATGAACAGCTTTGAGCTTGCACTTCAGTTTGGGATATCAGTTATGGTCATAGCTTGCCCTTGTGCTCTAGGCCTAGCCACTCCTACAGCTGTCATGGTTGGTACTGGAGTTGGTGCAACTCAAGGTGTGTTGATCAAAGGAGGGAAAGCCTTAGAAAGTGCACATAAGGTGAATTGCATTGTATTTGATAAGACAGGTACTCTGACAGTTGGGAAGCCAGTGGTTGTTGCTACAAAACTCTTCAAAAATATGTCACTTCAAGATTTCTACCAATTTGTTGCTGCAGCAGAGGCAAGAGTGAACAGTGAGCATCCAATAGGCAAGGCAATTGTTGAGCATGCCAAGAAGACAGCAGAATATAATGAACAAAATCATCCCTTGCCAGAAGCAAGCCACTTTGTTTCTGTTTCAGGTCATGGAGTGAGGGCAATTGTGAAAAACAAGGAAATAATGGTTGGTAACAAAAAACTGATGTTGGATCATAACATAGGCATTTCAGTAGATGCTGTAGAAATGCTAGCAGAAGCTGAAAATCGGGCTCAGACTGGGATTTTGGTATCACTGGATGGAGAAATAGCTGGAGTTTTGGCAGTATCTGACCCATTGAAACCTGATGCCAAACAAATTATTTCAATTCTGAACTCAATGAAGATCAGGAGCATCATGGTGACAGGTGATAATTGGGGAACTGCCAATTCCATAGCTAGACAAGCTGGTATTGAAACTGTCATTGCAGAGGCTCAACCTGAGGCCAAAGCTATCAAAGTAAAAGATTTGCAGAGTTCAGGATACACTGTGGCAATGGTTGGAGATGGAATAAATGACTCACCAGCACTAGTGGCAGCTGATGTAGGAATGGCAATAGGCGCTGGCACTGACATAGCTATTGAAGCTGCTGACATAGTTCTAATGAAGAGCAACTTGGAGGATATCATTATTGCCATTGACCTTGCTAAGAAAACTTTTTCACGTATTGGCCTGAACTACATTTGGGCTCTTGGTTATAATCTACTAGCTATTCCAATTGCTGCAGGGGTCCTTTACCCATTCACTAGGTTCAGGTTACCACCATGGATTGCAGGAGCTGCTATGGCTGCTTCTTCTGTTACTGTTGTTTGTTCCTCACTCTTGTTAAAGAATTACAAGAGACCAAAGATGCTAGACAACTTGGACATAAATGGTATTAAGATTGGATAG 2979 0.4052 MGRSKFEAWKCMNKFQCCVNLSPQPHYPSMTRYPKGTKKEVVVVEKPGSESKAVFSVMGMTCSACAGFVEKAIKHLPGIREAFVDVLNDKALVLYHPAMVNKERICEAIEDAGFESKPIDEESNDTSSQICRIHIKGMTCTSCSSTVESALQTIHGVQKARVALATEEAEICYDPNIVSHNQLMETIGDVGFEAILISTGEHISKIEFKIVGILNEQSISAIEHSLKALAGVEIIDIYPHINKITITYKPYMTGPRTFIQVIESTGSACFRAVIFPNKGGRETHRQEEIKRYFKFFIWSLALTIPVFLTSMVLMYIPGVKHVLDMKVVNMLNIGLLLRWEFCTPVQFIIGMRFYIGSYKALRNGSANMDVLVALGTNAAYFYSVYVVARAAFSKDFKGSDFFETSAMLISFILLGKYLEVLAKGKTSQAIAKLMDLTPDTATLLTQDDEGNVISEQQIDSRLVHKNDVIKIVPGAKVASDGLVIWGKSHINESMITGEATPVAKREGDMVIGGTVNENGVLHVKVTRVGSESALSQIVRLVESAQMAKAPVQKLADHISKYFVPLVILLSISTWFSWFLAGQLHAYPKSWIPSSMNSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGATQGVLIKGGKALESAHKVNCIVFDKTGTLTVGKPVVVATKLFKNMSLQDFYQFVAAAEARVNSEHPIGKAIVEHAKKTAEYNEQNHPLPEASHFVSVSGHGVRAIVKNKEIMVGNKKLMLDHNIGISVDAVEMLAEAENRAQTGILVSLDGEIAGVLAVSDPLKPDAKQIISILNSMKIRSIMVTGDNWGTANSIARQAGIETVIAEAQPEAKAIKVKDLQSSGYTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLMKSNLEDIIIAIDLAKKTFSRIGLNYIWALGYNLLAIPIAAGVLYPFTRFRLPPWIAGAAMAASSVTVVCSSLLLKNYKRPKMLDNLDINGIKIG 992
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1523 992 SUPERFAMILY HAD-like 654 969 IPR036412 -
Lal23g1523 992 ProSitePatterns E1-E2 ATPases phosphorylation site. 657 663 IPR018303 -
Lal23g1523 992 SFLD p-type atpase 637 914 IPR044492 -
Lal23g1523 992 SUPERFAMILY HMA, heavy metal-associated domain 48 122 IPR036163 GO:0046872
Lal23g1523 992 PRINTS P-type cation-transporting ATPase superfamily signature 491 505 - -
Lal23g1523 992 PRINTS P-type cation-transporting ATPase superfamily signature 655 669 - -
Lal23g1523 992 PRINTS P-type cation-transporting ATPase superfamily signature 788 799 - -
Lal23g1523 992 PRINTS P-type cation-transporting ATPase superfamily signature 810 820 - -
Lal23g1523 992 PRINTS P-type cation-transporting ATPase superfamily signature 863 882 - -
Lal23g1523 992 PRINTS P-type cation-transporting ATPase superfamily signature 886 898 - -
Lal23g1523 992 ProSiteProfiles Heavy-metal-associated domain profile. 205 266 IPR006121 GO:0046872
Lal23g1523 992 Pfam Heavy-metal-associated domain 54 115 IPR006121 GO:0046872
Lal23g1523 992 Pfam Heavy-metal-associated domain 133 192 IPR006121 GO:0046872
Lal23g1523 992 Pfam haloacid dehalogenase-like hydrolase 651 877 - -
Lal23g1523 992 PANTHER ATP7, ISOFORM B 20 983 - -
Lal23g1523 992 SUPERFAMILY HMA, heavy metal-associated domain 200 268 IPR036163 GO:0046872
Lal23g1523 992 CDD P-type_ATPase_Cu-like 296 974 - -
Lal23g1523 992 Pfam E1-E2 ATPase 436 633 - -
Lal23g1523 992 ProSitePatterns Heavy-metal-associated domain. 57 86 IPR017969 GO:0046872
Lal23g1523 992 PRINTS Copper-transporting ATPase 1 signature 52 77 - -
Lal23g1523 992 PRINTS Copper-transporting ATPase 1 signature 78 101 - -
Lal23g1523 992 PRINTS Copper-transporting ATPase 1 signature 107 127 - -
Lal23g1523 992 PRINTS Copper-transporting ATPase 1 signature 153 174 - -
Lal23g1523 992 ProSiteProfiles Heavy-metal-associated domain profile. 52 118 IPR006121 GO:0046872
Lal23g1523 992 Gene3D - 744 794 IPR023299 GO:0000166
Lal23g1523 992 Gene3D - 662 743 IPR023299 GO:0000166
Lal23g1523 992 SUPERFAMILY Calcium ATPase, transmembrane domain M 403 647 IPR023298 -
Lal23g1523 992 SUPERFAMILY Calcium ATPase, transduction domain A 455 541 IPR008250 -
Lal23g1523 992 Gene3D - 423 545 - -
Lal23g1523 992 Gene3D - 48 117 - -
Lal23g1523 992 CDD HMA 135 194 IPR006121 GO:0046872
Lal23g1523 992 SUPERFAMILY HMA, heavy metal-associated domain 128 201 IPR036163 GO:0046872
Lal23g1523 992 Gene3D - 128 200 - -
Lal23g1523 992 PRINTS Copper-transporting ATPase signature 353 372 - -
Lal23g1523 992 PRINTS Copper-transporting ATPase signature 405 424 - -
Lal23g1523 992 PRINTS Copper-transporting ATPase signature 425 443 - -
Lal23g1523 992 PRINTS Copper-transporting ATPase signature 638 653 - -
Lal23g1523 992 PRINTS Copper-transporting ATPase signature 840 857 - -
Lal23g1523 992 PRINTS Copper-transporting ATPase signature 936 950 - -
Lal23g1523 992 SFLD C1.7: P-type atpase like 637 914 - -
Lal23g1523 992 ProSiteProfiles Heavy-metal-associated domain profile. 130 196 IPR006121 GO:0046872
Lal23g1523 992 CDD HMA 54 115 IPR006121 GO:0046872
Lal23g1523 992 TIGRFAM TIGR00003: copper ion binding protein 53 115 IPR006122 GO:0005507
Lal23g1523 992 TIGRFAM TIGR00003: copper ion binding protein 133 194 IPR006122 GO:0005507
Lal23g1523 992 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 20 983 - -
Lal23g1523 992 ProSitePatterns Heavy-metal-associated domain. 135 164 IPR017969 GO:0046872
Lal23g1523 992 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 408 940 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Lal23g1523 992 Gene3D - 622 919 IPR023214 -
Lal23g1523 992 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 368 972 IPR027256 GO:0006812|GO:0016021|GO:0019829
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1523 Lal-Chr23 15383880 15395653 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1523 51 991 Primary Pumps ATPases AT1G63440 71.958 0.0 1391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1523 K17686 - gmx:100817431 1541.94
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1523 23 15383880 15395653 Lal23g1523 23 15383880 15395653 ECH