Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1521 ATGAAGTTATGTACTAGTTGGTTTTTGATTTCCACGTTCACACTCTCTCTTCTTGCTTCTGCTACTGTGCCCCCAAACGAAGTTTGGGGGCTTACAAGTTTTAAAGAAGCTATATATGAAGACCCATACCTAGTTTTATCAAATTGGAACACTTTGGATTCAGATCCTTGTGACTGGTTTGGTGTCTCATGCACTATGGCTCGTGATCATGTCCACAAGCTAAACATCTCAGGATCATCATTAAGAGGGTTTATTGCACAAGAATTGGGGCAAATCACTTACTTGCAAGAATTAATTTTACGTGGCAACAATCTCATTGGCACAATACCTAAAGACCTGGGCATGTTGAAATCTCTCAAGGTGTTGGATTTGGGAAAGAATCAGTTAACAGGACCAATTCCTCCAGAGATTGGAAATTTAACCCTAGTTGTGAACATAAACCTACAGTCCAACAGGTTGACTGGCAGGCTACCTGCAGAGCTTGGAAATTTGAGATACCTACAAGAACTTCGGTTGGATAGGAATAAGCTTCAAGGATCTGTCCCTGCTAGTAGCAGTTCAAATTTTGATTCAAATATGCATGAGATGTATGCCTCAAAAGCGAATTTGACTGGCTTCTGTCGTTCATCTCAGTTAAAAGTTGCAGACTTTTCATATAACTTTTTAGTTGGTAACATACCAAAATGCTTGGAGTATCTTACAAGGTCAAGCTTTCAAGGGAACTGCCTCCAGAGCAAAGACTTGGAGCAGCGCCCTTTTATACAATGTGTAAACTATTACTTCATAGATGGTGCTTCACCTGCCAAGAGCCAGCCTGTGGCGAACCCAAACCACCAGCGAGCAGAATATGTGTCAAAGCATCACGGAACATCAAAACCAGTATGGCTTTTGATTCTAGAGATAGTATCAGGAGCCATTGTTTGTTCTCTCTTTCTGGTTGCAGTTCTCACTGCTTGTCTGAAGTGTAACAAAAAAGCATCAATTATTATTCCTTGGAAAAAGTTTTCAAGCCAGAAAGAGCATACAGCAGTATATATAGACCCCGAGATGTTGAAGGATGTGAGGAGTTATAGCAGACAAGAGCTTGAAGTGGCCTGTGAAGACTTCAGCAACATAATTGGGTCCTCACCAGACAGTGTGGTCTACAAGGGAAACATGAAAGGTGGGCCTGAGGTTGCTGTGATTTCTGTCAGCATCAAGGAGGATCATTGGACAGGATATCTTGAACTCTATTTTCAGAGAGAGGTAGCAGACTTGGCAAGGCTAAATCATGAGAATACAGGAAAACTGTTGGGCTATTGTAGAGAAAGCACTCCGTTCACAAGGATGTTGGTGTTTGAGTATGCTTCAAATGGGACACTTTATGATCACCTACATTGTTATGAAGGGTGCCAGTTCTCTTGGACACGGCGTATGAAAATTGTTATAGGCATTGCACGTGGACTCAGGTATTTGCACACAGAAGCTGAGCCTCCATTCACTATTTCAGAGCTGAATTCTAGTGCTGTATACCTTACAGAAGAATTTTCCCCCAAGTTGGTTGATTTTGAAAGTTGGAAGTCAATCCTTGAAAGATCAGAAAAGAATTCTGGTTCTATTGGTAGTCAAGGTGCTATCTGTGTTCTTACAAATTCCCTCGAGGCACGACATCTCGATACCAAAGGAAACATACATGCTTTTGGGGTGCTTCTGCTGGAGATAATCAGTGGCAGACCACCATACAGTAATGAGAAAGGGTACTTGGTGGATTGGGCCAAGGGATATATTGAAATGCCAGAAGTAATGTCACATGTGGTGGATCCTGAATTGAAACATTTTAGATATGAAGACCTCGAAGCAATATGTGAGGTAGTAACTCTTTGTATCAACACTGATCCCACTGCATGTCCATCAATGCGAGAATTATGCAGCATGCTGGAGATCAGAATTGACACTTCAGTAAGTGTGGAGCTCAAATCATCATCTTTAGCTTGGGCTGAACTTGCACTTTCATCATAA 1998 0.4164 MKLCTSWFLISTFTLSLLASATVPPNEVWGLTSFKEAIYEDPYLVLSNWNTLDSDPCDWFGVSCTMARDHVHKLNISGSSLRGFIAQELGQITYLQELILRGNNLIGTIPKDLGMLKSLKVLDLGKNQLTGPIPPEIGNLTLVVNINLQSNRLTGRLPAELGNLRYLQELRLDRNKLQGSVPASSSSNFDSNMHEMYASKANLTGFCRSSQLKVADFSYNFLVGNIPKCLEYLTRSSFQGNCLQSKDLEQRPFIQCVNYYFIDGASPAKSQPVANPNHQRAEYVSKHHGTSKPVWLLILEIVSGAIVCSLFLVAVLTACLKCNKKASIIIPWKKFSSQKEHTAVYIDPEMLKDVRSYSRQELEVACEDFSNIIGSSPDSVVYKGNMKGGPEVAVISVSIKEDHWTGYLELYFQREVADLARLNHENTGKLLGYCRESTPFTRMLVFEYASNGTLYDHLHCYEGCQFSWTRRMKIVIGIARGLRYLHTEAEPPFTISELNSSAVYLTEEFSPKLVDFESWKSILERSEKNSGSIGSQGAICVLTNSLEARHLDTKGNIHAFGVLLLEIISGRPPYSNEKGYLVDWAKGYIEMPEVMSHVVDPELKHFRYEDLEAICEVVTLCINTDPTACPSMRELCSMLEIRIDTSVSVELKSSSLAWAELALSS 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1521 665 Pfam Protein tyrosine and serine/threonine kinase 370 639 IPR001245 GO:0004672|GO:0006468
Lal23g1521 665 Pfam Leucine Rich Repeat 118 140 IPR001611 GO:0005515
Lal23g1521 665 Gene3D Phosphorylase Kinase; domain 1 339 448 - -
Lal23g1521 665 PANTHER PROTEIN MALE DISCOVERER 2 8 665 - -
Lal23g1521 665 Gene3D Ribonuclease Inhibitor 28 140 IPR032675 -
Lal23g1521 665 ProSiteProfiles Protein kinase domain profile. 367 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g1521 665 SUPERFAMILY L domain-like 25 234 - -
Lal23g1521 665 SUPERFAMILY Protein kinase-like (PK-like) 347 642 IPR011009 -
Lal23g1521 665 Pfam Leucine rich repeat N-terminal domain 30 64 IPR013210 -
Lal23g1521 665 Gene3D Transferase(Phosphotransferase) domain 1 449 654 - -
Lal23g1521 665 Gene3D Ribonuclease Inhibitor 141 263 IPR032675 -
Lal23g1521 665 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 8 665 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1521 Lal-Chr23 15376845 15382747 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1521 1 645 Receptor kinase-like Gene Family AT2G35620 26.778 3.24e-53 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Lal23g1521 PK_Tyr_Ser-Thr 3.1e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1521 - - gmx:100794714 1065.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1521 23 15376845 15382747 Lal23g1521 23 15376845 15382747 ECH
Lal16g0102 16 587387 591924 Lal23g1521 23 15376845 15382747 LSH
Lal23g1521 23 15376845 15382747 Lal16g1223 16 8507910 8512339 PCT