LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal23g1515	ATGGAGCAAACTGGGGAATCAGATTTGCAGAGATTCCTTCCGACACCGTTTTTGACCAAAACCTATCAGCTTGTTGATGATCCTTCTGCGAATGACCTAATTTCATGGAATGAAGATGGAACAACCTTCATAGTTTGGAAACCCGCTGAATTCGCTCGAGATTTGCTTCCTAATTATTTCAAACACAACAACTTCTCAAGTTTCGTTCGCCAGCTTAATACATATGGATTTCGGAAAGTTGTACCTGACCGTTGGGAATTCGCTCATGATTGTTTCCGTCGCGGCGAGAGAGGTCTACTGAGAGAAATTAAGCGCCGGAAAATATCACCGGCGGCAGCAATCGCAGCCAACACGGTGACTGTTGCAGTGGCGGCGCCCGCACTGGCGAGAACGGTGTCGCCAACAACTTCCGGCGAAGAACAGGTACTCTCCGCAAACTCATGTCCGAATATTACAGTGCAGCAGAGCACAACGAGTTGCACGAATATACCCGAACTATTAGAAGAGAACGAGAGGCTTAGGAAAGAAAACATGCAAATGAGTAACGAGTTGATTCAATTGAAGAGTTTGTATAATAACATATTCGGTTTGATGTCAAATTATGCTTCTTCTCGTTCTGCTCAATTTCACTCATCTATTAGCGCTGCTGTACCTGAAGGGAAATCATTGGATCTTATGCCTCCAACAAAGTATGCGACACCGTTTAAGGCAGGAGATGGAGAAGTTCCGAAATTGTTTGGGGTTTCAATTGGTATGAAGAGAGGACATAGGACAGAAAGTGAGGGTGAAACAGAGAAAGAATATCAAACACAGTTGTCGCATGAAGCAGATGGCGGGTCAGATGTGAAATCTGAACCGCATGATGGGGATAACTCTGGTGATCAGGTTAAGGAAACTCGTTGGTTGGAGCTTGGAAAATAA	921	0.4463	MEQTGESDLQRFLPTPFLTKTYQLVDDPSANDLISWNEDGTTFIVWKPAEFARDLLPNYFKHNNFSSFVRQLNTYGFRKVVPDRWEFAHDCFRRGERGLLREIKRRKISPAAAIAANTVTVAVAAPALARTVSPTTSGEEQVLSANSCPNITVQQSTTSCTNIPELLEENERLRKENMQMSNELIQLKSLYNNIFGLMSNYASSRSAQFHSSISAAVPEGKSLDLMPPTKYATPFKAGDGEVPKLFGVSIGMKRGHRTESEGETEKEYQTQLSHEADGGSDVKSEPHDGDNSGDQVKETRWLELGK	306

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal23g1515	306	Pfam	HSF-type DNA-binding	17	106	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lal23g1515	306	PANTHER	HEAT STRESS TRANSCRIPTION FACTOR B-2B	6	297	-	-
	Lal23g1515	306	SMART	hsfneu3	13	106	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lal23g1515	306	Coils	Coil	163	190	-	-
	Lal23g1515	306	MobiDBLite	consensus disorder prediction	253	306	-	-
	Lal23g1515	306	ProSitePatterns	HSF-type DNA-binding domain signature.	56	80	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lal23g1515	306	MobiDBLite	consensus disorder prediction	254	306	-	-
	Lal23g1515	306	Gene3D	-	11	107	IPR036388	-
	Lal23g1515	306	PRINTS	Heat shock factor (HSF) domain signature	17	40	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lal23g1515	306	PRINTS	Heat shock factor (HSF) domain signature	55	67	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lal23g1515	306	PRINTS	Heat shock factor (HSF) domain signature	68	80	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Lal23g1515	306	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	6	297	IPR027725	-
	Lal23g1515	306	SUPERFAMILY	"Winged helix" DNA-binding domain	14	106	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal23g1515	Lal-Chr23	15337586	15345803	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lal23g1515	8	306	HSF	AT4G11660	51.497	2.00e-97	290

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Lal23g1515		HSF_DNA-bind	3.4e-33	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal23g1515	K09419		-	gmx:100791020	376.326