Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1510 ATGGCCTCATCATCTTCTTCTTCTTCTTCTAAGAGACACCCTTTGTTTCATGGAATTCGTTGCCGGGGACGAAAATGGGTGTCCGAAATCCGGGAGCCACGTAAGGCTTCCCGCATTTGGCTAGGCACGTTCCAAACACCAGAGATGGCGGCCGCCGCATACGATGTGGCGGCGTTGGCCTTAAAAGGGAACAATGCTGTTGTGAATCTCCCTCACTACATTGGCAAGTATCAAATGCCACCAACTAATTCTCATGCAGATATTCGTAGTGCTGCTACTGTTGCAGCCGAATTGGTGAAGGCTGAAGCCACCAACAACATTGCATCAATGAATGTTGATCATCATGACAATGGTAACACTTGTCATAGTGTTAATGATATTACTTCATATTCTTGGTTTGGAAGTGATTTCATAGATGAGGAAGCCATATTCGGCATGCCAAATTTGCTGGTGGATATGGCTGGGGGAATGCTTCTATCACCACCTAGGATATGGAGCCCACCGTCGTTGGAAAAGCCAGGTGGAGAAAATCTATGGAATTTTTGTTCATAA 552 0.4583 MASSSSSSSSKRHPLFHGIRCRGRKWVSEIREPRKASRIWLGTFQTPEMAAAAYDVAALALKGNNAVVNLPHYIGKYQMPPTNSHADIRSAATVAAELVKAEATNNIASMNVDHHDNGNTCHSVNDITSYSWFGSDFIDEEAIFGMPNLLVDMAGGMLLSPPRIWSPPSLEKPGGENLWNFCS 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1510 183 SMART rav1_2 15 77 IPR001471 GO:0003700|GO:0006355
Lal23g1510 183 Pfam AP2 domain 17 63 IPR001471 GO:0003700|GO:0006355
Lal23g1510 183 Gene3D AP2/ERF domain 16 73 IPR036955 GO:0003700|GO:0006355
Lal23g1510 183 ProSiteProfiles AP2/ERF domain profile. 6 71 IPR001471 GO:0003700|GO:0006355
Lal23g1510 183 SUPERFAMILY DNA-binding domain 17 72 IPR016177 GO:0003677
Lal23g1510 183 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 4 181 - -
Lal23g1510 183 PANTHER ETHYLENE RESPONSE FACTOR 4 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1510 Lal-Chr23 15303642 15304193 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1510 2 181 AP2-EREBP Transcription Factor Family AT5G52020 45.946 3.93e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lal23g1510 AP2 4e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1510 - - gmx:100811020 234.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1510 23 15303642 15304193 Lal23g1510 23 15303642 15304193 ECH
Lal16g1240 16 8647291 8647809 Lal23g1510 23 15303642 15304193 PCT