Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1509 ATGGGTCTTTGCCTTGCTTCACTCGCTTCTCCCTCTACCCGTTCATTGAGGTATGAGAGTAAGAATGTGTCATCCTCGAAGAGTAGATATTCAGAGATAGAGAGTGAAAGTGTAAGCGGCTTAATAGTGTCAAAGAGTGGGAAGATTCTGGAAACACCAAACATGAAAGTGTTCAGTTATGTAGAAATGAAAGCAGCCACAAAGAATTTCAAGTTGGATGCATTGCTTGGTGAAGGTGGTTTTGGTAAAGTTTATAAAGGTTGGTTGCATCACAACACACTCACCCCTGCAAAACCAGGCTCTGGGTTCATTGTTGCTATCAAAAAATTGAACACACAAAGTAACCAAGGCTTTCAAGAGTGGAAGTCATGGGTGGCCAAGCATAAGCAACTGAAGCATTCAGAAGTGAACTTTCTAGGAAGGATTTCACACCCAAACTTGGTGAAGCTATTGGGTTACTGTATGGATGATAAGGAACTTCTCCTTGTGTATGAGTTTATGCAAAAGGGAAGCTTGGAGAGTCATCTCTTCAGAAGACATGTTAACACAGAACCACTTTCTTGGAACACAAGACTCAAAATAGCTACTGATGCAGCTCGTGGCTTGGCTTTCTTGCACACTTCAGAAAAGAAAGTTATACACAGAGATTTCAAGGCCTCCAATATACTACTTGATGGGAATTACAATGCAAAAATTTCAGATTTTGGGGTGGCTAAATTAGGGCCTTCTGGGGGAGATTCACATGTGAGTACCAGGATCATTGGCACACTTGGTTATGTTGCTCCAGAATACATGTCTACAGGTCACTTGTATGTAAAGAGTGATGTTTATGGATTTGGTGTAGTGCTGCTTGAAATTATGACAGGGTTGAGGGCAATTGATATAAAGAGGCCCAAAGCGGAACAGAACCTAGTTGAATGGATTAAGCCATTTTTGTATAAGAAAAGAGAGATTAAAAGTATTATGGATGAAAAGTTAGAAGGCCAATATTCAATAAAAGCAGCAACACAAGTAGCACAGCTTACTCTAAAATGTATAGAATCTAACCATAAAAACCGTCCTTCTATGCAACATGTACTTCACACATTGGAAAGCATTCAAGCTGTCAATGTTGAAACAAAGAAATCCAAGAAACTTCATCCTAGGTCTGCAACTTTTCCCCATTTCCCACAACCCATTTATCATTATTCTGCACCTATGTATCCTTAG 1209 0.3987 MGLCLASLASPSTRSLRYESKNVSSSKSRYSEIESESVSGLIVSKSGKILETPNMKVFSYVEMKAATKNFKLDALLGEGGFGKVYKGWLHHNTLTPAKPGSGFIVAIKKLNTQSNQGFQEWKSWVAKHKQLKHSEVNFLGRISHPNLVKLLGYCMDDKELLLVYEFMQKGSLESHLFRRHVNTEPLSWNTRLKIATDAARGLAFLHTSEKKVIHRDFKASNILLDGNYNAKISDFGVAKLGPSGGDSHVSTRIIGTLGYVAPEYMSTGHLYVKSDVYGFGVVLLEIMTGLRAIDIKRPKAEQNLVEWIKPFLYKKREIKSIMDEKLEGQYSIKAATQVAQLTLKCIESNHKNRPSMQHVLHTLESIQAVNVETKKSKKLHPRSATFPHFPQPIYHYSAPMYP 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1509 402 Gene3D Phosphorylase Kinase; domain 1 54 166 - -
Lal23g1509 402 Pfam Protein tyrosine and serine/threonine kinase 71 363 IPR001245 GO:0004672|GO:0006468
Lal23g1509 402 ProSiteProfiles Protein kinase domain profile. 70 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g1509 402 PANTHER OS01G0588500 PROTEIN-RELATED 22 377 - -
Lal23g1509 402 ProSitePatterns Protein kinases ATP-binding region signature. 76 109 IPR017441 GO:0005524
Lal23g1509 402 PANTHER SERINE/THREONINE-KINASE CX32, RELATED PROTEIN 22 377 - -
Lal23g1509 402 CDD STKc_IRAK 76 366 - -
Lal23g1509 402 Gene3D Transferase(Phosphotransferase) domain 1 167 385 - -
Lal23g1509 402 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Lal23g1509 402 SUPERFAMILY Protein kinase-like (PK-like) 49 364 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1509 Lal-Chr23 15292632 15295592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1509 56 363 Glycoside Hydrolase AT3G07070 46.926 3.43e-92 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lal23g1509 PK_Tyr_Ser-Thr 3.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1509 - - pvy:116127793 490.345
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1509 23 15292632 15295592 Lal23g1509 23 15292632 15295592 ECH