Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1506 ATGGGAGGTGAAGGTGCTGTTGAAGGTGCAGGGTCCGTAGCTAATGGTGGAGTCGGTATCAATATTCGATGCTCCAATGGTACCAAATTTACCGTTCAGATTAATCTCGATTCCACCGTTGGATCATTCAAGGAGATCGTTGCTCGAAACTGTGATATCCCCGCTGAACAACAGCGTCTCATTTATAAGGGTCGCATCCTCAAGGATGATCAAACTCTCAAAACCTATGGTTTGGAGGCGGATCACACCATCCACTTGGTTCGTGGCTTTGCACCTGGCAACACAGCTGGTGGGACCAATACTGGTAGTGCCAACACCACGACGAATAATACGAGTGGTGCTGGTGCTAATGTGGGCGGGGGTCTTGGCGGGTCAGGTCCTGGGGCATCGCTTTTCCCTGGGCTTGGTATCAATGGATTGGGGGGCAGTGGCTTATTTGGAGAGGGCCTTCCCGATCTTGAACAAATGCAGCAACCATTTTTGTCAAATCCCAATTTAGTGAGAGAAATGATGAACACTCCAGCTATGCAGAATTTAATAAATAATCCTGAGATTGTGCGGAATCTTATAATGAATAACCCACAAATGCAAGAGCTCATGGATCGAAACCCTGAGCTAGCACACATACTTAATGATCCCAGCACTCTTCGTCAGACACTTGAAGCTACTAGGAACCCTGAGATCATGCGTGAAATGATGAGGAACACAGACAGAGCAATGAGCAATATTGAATCTTCTCCTGAGGGATTTAACATGCTAAGGCGCATGTATGAAAATGTTCAAGAACCATTTTTGAATGCCACTACAATGGGCGGTAATACAGCAAATGATAATGCATCGATCTTGGGGACTCAAGGTGGCCAAGTCAGGAACCAATCAACTAATCCCTCAACTACTAGTTCCGAAGCAACTTCCCCCGCACCAAATACTAACCCGCTTCCCAATCCTTGGTCCTCAGCTGGAACTGGAGGTGCCCAAAACAACACCAGAGGGCCAACTACTGGCGGGGATGCTCGACAGCAGACACCTACAGGCCTAGGAGGGCTCGGTCTGCCAGATCTTGAAGGCATGTTGGGCAGTATGCCAGATGCTGCTTTGATGACCCAGTTAATGCAAAATCCAGCTATTTCTCAAATGATGCAAAGTATGCTTTCCAATCCACAGACTATGAATCAGGTTCTTGGTGCCAATGCTGGGCAGCGTGGCATGCCTGATATGAATGCTCTTAGAGAAGTCATGCAGAACCCAGAGTTTCTTCGCCTGTTTTCCTCACCCGAGACACTGCAGCAACTTATGTCTTTCCAACAATCCTTTATGTCTCAGCTTGGTCAGCAACAATCAACCCGGGAACCTGGTCAAACTGGTGCTGGTACTGGTACTGGACCATTTAACAACATGGGGCTGGAGATGTTATCAAGCATGTTTGGTGGACTTGGAACCGGTAGCTTATCTGTTCCAAACAGATCAAATGAGCCACCAGAGCAATTGTATGCCACCCAACTTTCACAGCTTCAAGAGATGGGGTTCTTTGACACACAAGAGAACATAAGGGCTCTTACTGCTACCTCAGGGAATGTTCATGCAGCTGTTGAGCGGCTTTTGGGGAATTCTGGTGGACAGTAG 1623 0.4763 MGGEGAVEGAGSVANGGVGINIRCSNGTKFTVQINLDSTVGSFKEIVARNCDIPAEQQRLIYKGRILKDDQTLKTYGLEADHTIHLVRGFAPGNTAGGTNTGSANTTTNNTSGAGANVGGGLGGSGPGASLFPGLGINGLGGSGLFGEGLPDLEQMQQPFLSNPNLVREMMNTPAMQNLINNPEIVRNLIMNNPQMQELMDRNPELAHILNDPSTLRQTLEATRNPEIMREMMRNTDRAMSNIESSPEGFNMLRRMYENVQEPFLNATTMGGNTANDNASILGTQGGQVRNQSTNPSTTSSEATSPAPNTNPLPNPWSSAGTGGAQNNTRGPTTGGDARQQTPTGLGGLGLPDLEGMLGSMPDAALMTQLMQNPAISQMMQSMLSNPQTMNQVLGANAGQRGMPDMNALREVMQNPEFLRLFSSPETLQQLMSFQQSFMSQLGQQQSTREPGQTGAGTGTGPFNNMGLEMLSSMFGGLGTGSLSVPNRSNEPPEQLYATQLSQLQEMGFFDTQENIRALTATSGNVHAAVERLLGNSGGQ 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1506 540 SMART uba_6 497 535 IPR015940 -
Lal23g1506 540 CDD Ubl_Dsk2p_like 18 90 - -
Lal23g1506 540 Gene3D - 479 540 - -
Lal23g1506 540 PANTHER UBIQUILIN 10 538 - -
Lal23g1506 540 SMART CBM 351 393 IPR006636 -
Lal23g1506 540 SMART CBM 396 431 IPR006636 -
Lal23g1506 540 SMART CBM 143 180 IPR006636 -
Lal23g1506 540 SMART CBM 193 232 IPR006636 -
Lal23g1506 540 CDD UBA_PLICs 497 535 - -
Lal23g1506 540 Gene3D - 16 99 - -
Lal23g1506 540 MobiDBLite consensus disorder prediction 268 356 - -
Lal23g1506 540 Gene3D - 188 246 - -
Lal23g1506 540 ProSiteProfiles Ubiquitin domain profile. 18 87 IPR000626 GO:0005515
Lal23g1506 540 Pfam Ubiquitin family 20 87 IPR000626 GO:0005515
Lal23g1506 540 MobiDBLite consensus disorder prediction 268 341 - -
Lal23g1506 540 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 491 536 IPR015940 -
Lal23g1506 540 SUPERFAMILY UBA-like 493 535 IPR009060 GO:0005515
Lal23g1506 540 SUPERFAMILY Ubiquitin-like 10 103 IPR029071 -
Lal23g1506 540 SMART ubq_7 18 89 IPR000626 GO:0005515
Lal23g1506 540 PANTHER UBIQUITIN DOMAIN-CONTAINING PROTEIN DSK2A-RELATED 10 538 - -
Lal23g1506 540 Pfam UBA/TS-N domain 497 533 IPR015940 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1506 Lal-Chr23 15278267 15283500 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1506 20 87 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 32.353 1.87e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1506 K04523 - gmx:100776447 760.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1506 23 15278267 15283500 Lal23g1506 23 15278267 15283500 ECH