Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1501 ATGTCTTATGATGTTTCCAATGGAGAAAACACAAACACCATAGAGAAGATAATAATAAGATTGGTGCATGAGGAATCAAGAAAAGATAGTTGTTCTTCATCAACATCATCGTTAGAAACATGTTGCTGTCAAGCTGATGAATGTGGAGTGAACTTGAGGATGGCAAACAAGTACAATCAGCGACACAAGGTTTGTGAACGACATTCTAAGGCTCCTGTCGTTTTGGTTTCAAGCATTCGTCAGAGGTTCTGCCAACAGTGTAGTAAGTTCCATGAGCTTGCACAGTTTGATGACACCAAAAGAAGTTGCAGGGAAAGATTGGCTGGTCATAACAAGCGTAGAAGAAAAACCCCACGTAGTTGGGAGTGA 369 0.4092 MSYDVSNGENTNTIEKIIIRLVHEESRKDSCSSSTSSLETCCCQADECGVNLRMANKYNQRHKVCERHSKAPVVLVSSIRQRFCQQCSKFHELAQFDDTKRSCRERLAGHNKRRRKTPRSWE 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1501 122 Gene3D - 33 104 IPR036893 GO:0003677|GO:0005634
Lal23g1501 122 ProSiteProfiles Zinc finger SBP-type profile. 40 117 IPR004333 GO:0003677
Lal23g1501 122 PANTHER - 27 119 - -
Lal23g1501 122 Pfam SBP domain 43 116 IPR004333 GO:0003677
Lal23g1501 122 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 27 119 IPR044817 GO:0003677
Lal23g1501 122 SUPERFAMILY SBT domain 41 120 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1501 Lal-Chr23 15254233 15254868 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1501 32 116 SBP-box Gene Family AT3G15270 58.824 5.12e-32 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Lal23g1501 SBP 4.3e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1501 - - gmx:100820357 145.206
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1501 23 15254233 15254868 Lal23g1501 23 15254233 15254868 ECH