Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1493 ATGGCGGAAACTAACGGTAACGGTTTCATCTATCTCCACGGCGACCTTCACCTTCAAATCATCGAAGCTCGCCGGTTGCCGAACATGGACCTCATGTCCGAGCGTTTCCGTCGCTGCATCACCGCCTGTGACACTATCAATATCCCTTCCTCCTCTGACTCCGCCTCCAAACCCGTCGGCGGCGATAACCGTTCCCATCGTCATCGCCGGAAAATCATCACAAGCGACCCGTACGTCGCCGTCACGGTACCCCAGTCCACCGTGGCCCGCACGCGCGTGCTCAAGAACGCCCAAAACCCTCGCTGGGACGAGACCTTCAAGATTCCCTTAGCGCACCCCTTAGAGTTTCTTGAGTTCCGCGTCAAAGACGATGACGTTTTCGGTGCACAGTCCATGGGAGCGGTTAAGATCCCGGCGAAGGATATTGCCTCCGGCAAGTTGATTTCCGGCTGGTTCCCGATTCTCGGAGCGAACGACAAGCCTCCGAAGCCTGACACTGCACTTCGGATCGAAATGCAGTTCACACCAATTTTAGAAAATCCATTGTACCATAATGGCATTGGGGCCGATCCGGAGCACCAGGGCGTGAGGCACACGTACTTCCCGGTGAGGAAGGGAAGCTCGGTGAGGCTGTATCAAGACGCGCAATGCCCCGATGGAATGTTAGAAGATATTAAACTTGAGAATGGGAATATTTATAGGCAAGGGAAGTGTTGGGAAGATATATGTTATGCTATAACTGAGGCTCATCATATGATTTATCTTGTGGGTTGGTCAATTTACCATAAGATAAAGCTTGTTAGGGAACCAACTAGGCCTTTGCCAAGAGGTGGAGATTTGACACTTGGTGATTTGCTTAAGTATAAGTCTGAAGAAGGAGTTAGAGTTTTGTTGCTGGTTTGGGATGATAAGACTTCACATGACAAGTTATTCTTTAAATCTACTGGAGTAATGCAGACTCATGATGAGGAAACGAAGAAGTTTTTTAAACATTCTTCTGTTATGTGTGTTCTAGCACCTCGCTACGCTAGCAGCAAGTTGAGTTTCTTGAAACAACAGGCAAGTATTGTATTTTATAGTTCCCTGGACTTGATACATCCTCCCTCCTCTATATGGCCAGGAGATGGGATTCTTTATGAGCTAATTTTCAGTAGAGTCAAATGTGAAATGCCCTATACTCTAAATCGTGTGTATGTCTTTTTTGTAGATGCAAAATGGATTACAGGAAATATACCTTTTCCTGTTGTTGGAACTGTCTTCACACACCACCAAAAATGTGTTATTGTGGACACCCAGGCTTCTGGCAATAACCGAAAGATAACTGCTTTTATAGGAGGTCTTGATCTATGTGATGGTCGCTATGACACACCTGAGCATCGACTTTTTCGTGATCTTGACACTGTATTTTTGGGTGATTTCCACAATCCTACATTTCCTGCTGGAACAAGGGTTCCAAGGCAACCATGGCATGATTTGCACTGCAGAATAGATGGACCTGCTGCATACGATGTCCTTATTAATTTTGAGCAGCGATGGAGAAAATCAACTAAGTGGAGAGAGTTCGCAATAATTTTCAAGAAAGTTTCTCATTGGCATGATGATGCTTTAATAAGAATTGGACGCATCTCCTGGATATTAAGTCCTTCCATTCCTACTCATACCTCAAGGAATACTTATACTATTGTTCCAGAGGATGACCCTTCAGTATGGGTTTCTAGTGAAGATGATCCTGAAAACTGGCATGTTCAGATCTTCCGCTCCATTGATTCAGGATCCCTGAAAGGATTTCCTAAACTTGTTGATGTTGCTCGGTCCCAGAATCTAATCTGTTCTAAAGATTTGGTCATAGACAAGAGCATTCAAACTGCTTACATTCAAGCAATCAGATCTGCTCAGCATTTTATCTATATTGAAAACCAATACTTTATTGGATCATCTTATGCATGGCCATCTTACAAAGATGCAGGGGCTGATAATCTCATTCCAATGGAATTGGCATTGAAAATTGCTAGTAAAATCAAAGCTAAGGAGAGATTTGCTGTTTACATTGTTTTACCAATGTGGCCAGAAGGTGATCCAAAATCTGGGGCTATGCAAGAAATCCTCTTTTGGCAGAGTCAGACAATGCGAACCATGTATAATGTTGTTGCTAAAGAATTAAAATCAATGCAACTTACTGATGTGCACCCACAAGATTACCTCAACTTCTATTGCCTTGGTAATCGGGAAGAATTTAATGAAGAAAGCTCAAGCACAAATGGTTCACAGGTCTCTGGAGCATATAAATGTCGCCGATTTATGATTTATGTGCATGCTAAGGGTATGATAGTCGATGATGAGTATGTTATAGTGGGATCTGCTAATATTAACCAAAGATCTATGGCTGGTACCAAAGATACCGAGATAGCTATGGGTGCATATCAACCCCATTACACTTGGTCTGCGAAGAAGAGGCATCCATTTGGTCAGATTTATGGTTACAGAATGTCACTGTGGAGAGAGCATCTTGGCATGTTAGAAGAAACTTTTGAGGAACCAGAAAGATTGGAATGTGTACGTAAAGTGAATGAAATTGCGGAAGATAATTGGAGAAGATACACTTCTGAAGATTTTTCACTGCTGCAAGGACATATTCTTAAGTATCCTGTACAAGTAGATTCTGATGGCCAGATTAGCTCTTTACCAGATTGTGAAAATTTCCCAGATGCTGGTGTCGGATTCTCCATTACCGCCAGCACCAAGAGGGTAAACCCTATAACTCTCTTCCATTACGCTAATCGCAATAGAATTCAAGGTCCCCTTCTCCATGGAGAGCTCAGTCAAGGTCTAGATCCAGGTCAAGATCTAAATCTAGGCCTAGGTCTAGATCGAGATCTGTTCCAAGGCAAAGGCCTATATCCCGTTCCAGAAGCCGTGGCAGTGCCTGATACTTCTTCCTTTTTGTGCACTTTTTTTCCTTTGTTGAATGATTGTTCTCTTCTCATCCAGATCAAGAGAAAGAAGACTGAGATTCACAATCCTGGGAATACACTTTATGTGACCGGTCTATCTTCCAGGGTCACTGAGCGAGAGCTAGAGGAGCATTTCGCTAAGGAGGGAAAAGTTGCTTCTTGTTTTCTTGTGGTGGAGCCCCGTACTCGTATTTCACGTGGTTTTGCTTTTATTACAATGGATACTGTTGAGGATGCAAACCGTTGTGTTAAGTATCTCAATCAGTCTGTTTTAGAAGGTCGCTATATCACTGTTGAGAAGTCACGGAGAAAGCGGCCAAGAACTCCTACACCAGGACACTATCTTGGACTTAAAAATACTAGAGAATATGGGTATCGTGGTGACCGTGGAGACCACGGAAGGTATCGAGGTGGATCTGGTCGAGATGATTATCCATACCGTAGGTCTCCAAGGTGCTCACCATATCGAGGTGGTCGGGATTATTCACCAAGGCACTCTCCCTATGCTGGAAGGTCTAGGAGGGAAAGATCCAGATCACCTTATTCTCCATATGCTAGCCCAGACAGGAGGTATGCTCGTGGATCTAGGGAGTGCACATTTTTCCCCATAATTTGCAATGTTGAAGTTTTATTATGGAGTGGCCGCCTGTGTTCAAAACTTGTTGTGTATGAAATATATGTTCCAAATGTCATCTATGAGAAGGATATGACTACATATGCGATGAGCCAAGTTATGATGTTTGATCGGTGGGAAGAGCTTCCTTCAGATTTGTTGTTTGAGATTGCAAAGCATCTTGATTCTGCTAAAGACTATGTTAGGTTTCGTGCCACTTGTAAAACGTGGAATCTGAATCTACCAAATACACCAAATCATATAAGAGGTCCAAAGTTGATGATACCTTTTGCTTTTAGCATGGGAATGGAGAATTTTGTGCATTTAAGATTACCAGAAAAGCCAAACAAAACCTTATATCGTGGATCTGGCTTTGGATGGTTGATTGGTATTGGGAATGATGGAGTAATAAAAATGTTGAATCCAATTTCCAATACTCAGATTGATCTTCCACCAATGTCAACCACACCAGACATCGTTGAATATCACCCAGACAATGAAGACGAGGAATATACTATAACAAAACATGTCCGTGATCGTCCATCCTATACTTATGTTGTTGAGAAAGATCACATACAAAAGTTGCATCTTCATAAATTTATTTTATCTTCCTCTCCTGAAGATCACACTCACGATTTCATGGCTTTAGTTATATATGGTGAACAACGTCAATTGGCTTTTTGTAGGATTGGAGACAGTAAGTGGACAACATTTTCCACCAAAGACTATTATTATCTTCAAGATGCAATATTTTATGAAGGAAAAATCTATGGTATAGACATTGACGCTGAACTTTTTGAATTTGATCCAAAGTCATTAACTGGGAGTATTGTTCAAGTGCCACCACCAAATGATGATCCTGAAATTCGACTTGTTGACCTCACTACAAAGTATTTGATTCCTAGTGTTGAAGGTGATTTGTTATTGGCGGTAAGACGTTGGCAATGGAAGAAATGGAGGGAAAACCATGGAGTGGATGAAGAATCCTACAATACTACCAAATTTAATGTATATAAATTAGATAAAAGTGCAGAGCAATGGGAAAAAGTGTCTAGTGTGGGAGATTCAGTTTTAGTAGTGGGATTCAATAACTCTATATGCATGTTACCTTTTAGTGATGGTAAAGACAATTGGATGAGAAATTGCATATATTTTACTGATAATAATGTTGAAGGTCAATACAGACAAATTTTTGGTGGCCAGGATGTTGGAGTCTTCAACCTCCAAGATAATACAATTCAGGAATTCTTCCCAGGCACAATCTTTCTTTATCCTCCACCACTTTGGCTACTTTCTTAG 4863 0.4187 MAETNGNGFIYLHGDLHLQIIEARRLPNMDLMSERFRRCITACDTINIPSSSDSASKPVGGDNRSHRHRRKIITSDPYVAVTVPQSTVARTRVLKNAQNPRWDETFKIPLAHPLEFLEFRVKDDDVFGAQSMGAVKIPAKDIASGKLISGWFPILGANDKPPKPDTALRIEMQFTPILENPLYHNGIGADPEHQGVRHTYFPVRKGSSVRLYQDAQCPDGMLEDIKLENGNIYRQGKCWEDICYAITEAHHMIYLVGWSIYHKIKLVREPTRPLPRGGDLTLGDLLKYKSEEGVRVLLLVWDDKTSHDKLFFKSTGVMQTHDEETKKFFKHSSVMCVLAPRYASSKLSFLKQQASIVFYSSLDLIHPPSSIWPGDGILYELIFSRVKCEMPYTLNRVYVFFVDAKWITGNIPFPVVGTVFTHHQKCVIVDTQASGNNRKITAFIGGLDLCDGRYDTPEHRLFRDLDTVFLGDFHNPTFPAGTRVPRQPWHDLHCRIDGPAAYDVLINFEQRWRKSTKWREFAIIFKKVSHWHDDALIRIGRISWILSPSIPTHTSRNTYTIVPEDDPSVWVSSEDDPENWHVQIFRSIDSGSLKGFPKLVDVARSQNLICSKDLVIDKSIQTAYIQAIRSAQHFIYIENQYFIGSSYAWPSYKDAGADNLIPMELALKIASKIKAKERFAVYIVLPMWPEGDPKSGAMQEILFWQSQTMRTMYNVVAKELKSMQLTDVHPQDYLNFYCLGNREEFNEESSSTNGSQVSGAYKCRRFMIYVHAKGMIVDDEYVIVGSANINQRSMAGTKDTEIAMGAYQPHYTWSAKKRHPFGQIYGYRMSLWREHLGMLEETFEEPERLECVRKVNEIAEDNWRRYTSEDFSLLQGHILKYPVQVDSDGQISSLPDCENFPDAGVGFSITASTKRVNPITLFHYANRNRIQGPLLHGELSQGLDPGQDLNLGLGLDRDLFQGKGLYPVPEAVAVPDTSSFLCTFFPLLNDCSLLIQIKRKKTEIHNPGNTLYVTGLSSRVTERELEEHFAKEGKVASCFLVVEPRTRISRGFAFITMDTVEDANRCVKYLNQSVLEGRYITVEKSRRKRPRTPTPGHYLGLKNTREYGYRGDRGDHGRYRGGSGRDDYPYRRSPRCSPYRGGRDYSPRHSPYAGRSRRERSRSPYSPYASPDRRYARGSRECTFFPIICNVEVLLWSGRLCSKLVVYEIYVPNVIYEKDMTTYAMSQVMMFDRWEELPSDLLFEIAKHLDSAKDYVRFRATCKTWNLNLPNTPNHIRGPKLMIPFAFSMGMENFVHLRLPEKPNKTLYRGSGFGWLIGIGNDGVIKMLNPISNTQIDLPPMSTTPDIVEYHPDNEDEEYTITKHVRDRPSYTYVVEKDHIQKLHLHKFILSSSPEDHTHDFMALVIYGEQRQLAFCRIGDSKWTTFSTKDYYYLQDAIFYEGKIYGIDIDAELFEFDPKSLTGSIVQVPPPNDDPEIRLVDLTTKYLIPSVEGDLLLAVRRWQWKKWRENHGVDEESYNTTKFNVYKLDKSAEQWEKVSSVGDSVLVVGFNNSICMLPFSDGKDNWMRNCIYFTDNNVEGQYRQIFGGQDVGVFNLQDNTIQEFFPGTIFLYPPPLWLLS 1620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1493 1620 ProSiteProfiles C2 domain profile. 1 152 IPR000008 -
Lal23g1493 1620 SMART rrm1_1 1010 1083 IPR000504 GO:0003723
Lal23g1493 1620 Gene3D Endonuclease Chain A 224 530 - -
Lal23g1493 1620 Gene3D C2 domain 12 182 IPR035892 -
Lal23g1493 1620 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1009 1087 IPR000504 GO:0003723
Lal23g1493 1620 Pfam Phospholipase D Active site motif 418 453 IPR001736 GO:0003824
Lal23g1493 1620 PANTHER PHOSPHOLIPASE D 413 904 IPR015679 -
Lal23g1493 1620 PANTHER PHOSPHOLIPASE D 8 351 IPR015679 -
Lal23g1493 1620 MobiDBLite consensus disorder prediction 1106 1133 - -
Lal23g1493 1620 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 766 793 IPR001736 GO:0003824
Lal23g1493 1620 CDD RRM_RBMX_like 1008 1087 - -
Lal23g1493 1620 CDD C2_plant_PLD 10 175 - -
Lal23g1493 1620 Gene3D - 1234 1272 - -
Lal23g1493 1620 SMART pld_4 418 453 IPR001736 GO:0003824
Lal23g1493 1620 SMART pld_4 766 793 IPR001736 GO:0003824
Lal23g1493 1620 PANTHER PHOSPHOLIPASE D DELTA 413 904 - -
Lal23g1493 1620 PANTHER PHOSPHOLIPASE D DELTA 8 351 - -
Lal23g1493 1620 Pfam Phospholipase D C terminal 840 904 IPR024632 -
Lal23g1493 1620 SUPERFAMILY Phospholipase D/nuclease 617 851 - -
Lal23g1493 1620 SUPERFAMILY RNA-binding domain, RBD 1005 1117 IPR035979 GO:0003676
Lal23g1493 1620 Gene3D Endonuclease Chain A 594 818 - -
Lal23g1493 1620 SUPERFAMILY F-box domain 1224 1267 IPR036047 GO:0005515
Lal23g1493 1620 Pfam PLD-like domain 625 803 IPR025202 -
Lal23g1493 1620 SMART C2_3c 15 151 IPR000008 -
Lal23g1493 1620 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 12 176 IPR035892 -
Lal23g1493 1620 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 418 453 IPR001736 GO:0003824
Lal23g1493 1620 Pfam C2 domain 14 154 IPR000008 -
Lal23g1493 1620 SUPERFAMILY Phospholipase D/nuclease 198 525 - -
Lal23g1493 1620 Pfam Protein of unknown function (DUF295) 1536 1596 IPR005174 -
Lal23g1493 1620 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 1011 1080 IPR000504 GO:0003723
Lal23g1493 1620 MobiDBLite consensus disorder prediction 1084 1174 - -
Lal23g1493 1620 Gene3D - 996 1133 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1493 Lal-Chr23 15186912 15200603 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1493 78 903 Phospholipase D Gene Family (Wang group) AT1G52570 41.974 0.0 633
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1493 K01115 - ath:AT4G35790 1228.39
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1493 23 15186912 15200603 Lal23g1493 23 15186912 15200603 ECH
Lal15g0085 15 591450 594495 Lal23g1493 23 15186912 15200603 LSH