Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1484 ATGAGTCTCAGAGGCGTTGTATCACTTTTCTTCAATTTAATTGGTCTAGCTGAAGGACCAACAAAGAAAGATAACCCTTTACCTTCTTACATGATACCAAGCACTATTATTTCTGAATCTGCATCATCATTGTCGAATTTTATGGAGAATGTTGAGGGTGGTCAGTGTTGTGTATGTTTGTCAAAGTTAAGCAACAAAGATGAAATCCGTGTTCTTCCTTGCTCGCATGAGTTTCATAAGATTTGTGTAAATAAATGGCTAAAGGGTCACCACAAAACATGTCCTCTTTGCCGTTTCTCAATAGGGGCCAAGGAGAAGTCTCATCATCGTGCTGAAATGTTCACAGAAGAAATGCTCATATGGTTTTCTTCTTTCCATATAGCTGACAGTGACGCTATCAAATGCTTTGTCCATGTGCGTAAGAACCCAAATACTTCAAATTCAAAGCAAAGCTCGAAACAAAAAAATTCCGTTGCCGGGAATCGAACCCGGGTCCCCTGGGTGAAAGCCAGATATCCTAACCGCTGGACGACAACGGAGATTGATGTTCCCTTCTCATAA 561 0.4082 MSLRGVVSLFFNLIGLAEGPTKKDNPLPSYMIPSTIISESASSLSNFMENVEGGQCCVCLSKLSNKDEIRVLPCSHEFHKICVNKWLKGHHKTCPLCRFSIGAKEKSHHRAEMFTEEMLIWFSSFHIADSDAIKCFVHVRKNPNTSNSKQSSKQKNSVAGNRTRVPWVKARYPNRWTTTEIDVPFS 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1484 186 CDD RING-H2_PA-TM-RING 55 98 - -
Lal23g1484 186 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 104 IPR013083 -
Lal23g1484 186 SUPERFAMILY RING/U-box 55 104 - -
Lal23g1484 186 Pfam Ring finger domain 55 98 IPR001841 -
Lal23g1484 186 ProSiteProfiles Zinc finger RING-type profile. 56 98 IPR001841 -
Lal23g1484 186 PANTHER TARGET OF ERK KINASE MPK-1 42 115 - -
Lal23g1484 186 SMART ring_2 56 97 IPR001841 -
Lal23g1484 186 PANTHER GB|AAF27103.1 42 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1484 Lal-Chr23 15134419 15135833 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1484 55 101 C3H Transcription Factor Family AT5G45290 58.333 8.30e-14 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1484 - - mtr:MTR_5g022770 180.259