Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1474 ATGGTTCTCGAGGCTACAATGATTTGTATTGACAATTCCGAATGGATGCGTAATGGAGATTACTCACCCTCTCGGTTTCAAGCTCAAGCAGACGCTGTCAATCTTATTTGTGGTGCTAAAACTCAGTCTAATCCAGAAAATACAGTTGGGGTTCTCACAATGGCTGGGAAAGGCGTTCGTGTTTTGGTCACCCCTACTAGTGATCTGGGCAAGATATTAGCTTGCATGCATGGACTAGAAATAGGTGGTGAGATGAACCTAGCCGCGGGCATTCAGGTTGCACAATTGGCTCTTAAGCATCGGCAAAATAAAAAACAGCAGCAAAGGATTATTGTTTTCACTGGAGGTCCTGTTAAGCATGAAAAGAAAATGCTGGAGATGATTGGGAGAAAGTTGAAAAAGAATAGTGTAGCTCTGGATATTATCAATTTTGGAGAAGAAGATGAAGGGAAAACAGAAAAACTGGAGGCACTCCTTTCATCTGTTAACAACAATGATACTAGCCACATTGTTCATGTTCCAGCTGGTCCAAATGCTCTTGCTGATGTACTTATAAGTACACCTATTTTCACTGGTGATGGGGAAGGAGGAAGTGGATTTGCTGCTGCTGCAGCTGCGGCTACAGCTGGTGGTGCATCTGGATATGAATTTGGAGTGGATCCAAACTTGGATCCTGAACTGGCTCTTGCTCTGAGAGTTTCAATGGAGGAGGAGAGAGCCAGGCAGGAAGCAGCAGCCAAAAAGGCTTCAGAGGATGCTGCGAAACAAGAGATAGGAGGTGATCAGCAGGCCGACTCACAAGATGCAACAATGACAGAGCATGCCAGTGCATCAACTTCAGAAGCTGAAAATAAGGCAAATGATTTGATGGATGACGAGAATGCCCTGCTAGAGCAGGCACTTGCAATGTCAATGGATGATCCTGTCATTAGCCATGATGTGAAAGATACAGATATGTCAGAAGCTGCTTCAGATGATCCTGAGTTGGCTTTAGTAGCAGATAGCACAAAGGATGCAGCAAGCCAGTCAGACATGAGTAAACTGTTGGCAGATGAATCCTTTGTGTCTTCTATCCTCGCATCGCTTCCTGGGGTTGACCCAAATGACCCTTCTGTCAAAGATTTGCTTGCCTCCATGCAAAGTCAGTCTGAGTCTCAGCAGAAGAACGATGACAAGCCATCATCAAATGAAGAGGAGAAGAAATAA 1206 0.4469 MVLEATMICIDNSEWMRNGDYSPSRFQAQADAVNLICGAKTQSNPENTVGVLTMAGKGVRVLVTPTSDLGKILACMHGLEIGGEMNLAAGIQVAQLALKHRQNKKQQQRIIVFTGGPVKHEKKMLEMIGRKLKKNSVALDIINFGEEDEGKTEKLEALLSSVNNNDTSHIVHVPAGPNALADVLISTPIFTGDGEGGSGFAAAAAAATAGGASGYEFGVDPNLDPELALALRVSMEEERARQEAAAKKASEDAAKQEIGGDQQADSQDATMTEHASASTSEAENKANDLMDDENALLEQALAMSMDDPVISHDVKDTDMSEAASDDPELALVADSTKDAASQSDMSKLLADESFVSSILASLPGVDPNDPSVKDLLASMQSQSESQQKNDDKPSSNEEEKK 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1474 401 Pfam von Willebrand factor type A domain 6 116 IPR002035 -
Lal23g1474 401 Gene3D von Willebrand factor, type A domain 3 186 IPR036465 -
Lal23g1474 401 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 1 401 - -
Lal23g1474 401 SMART VWA_4 2 175 IPR002035 -
Lal23g1474 401 Pfam Ubiquitin interaction motif 224 237 IPR003903 -
Lal23g1474 401 Pfam Ubiquitin interaction motif 292 307 IPR003903 -
Lal23g1474 401 Gene3D - 220 306 - -
Lal23g1474 401 Coils Coil 279 299 - -
Lal23g1474 401 ProSiteProfiles VWFA domain profile. 5 189 IPR002035 -
Lal23g1474 401 MobiDBLite consensus disorder prediction 260 284 - -
Lal23g1474 401 MobiDBLite consensus disorder prediction 374 389 - -
Lal23g1474 401 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 222 241 IPR003903 -
Lal23g1474 401 MobiDBLite consensus disorder prediction 360 401 - -
Lal23g1474 401 Coils Coil 232 252 - -
Lal23g1474 401 SUPERFAMILY vWA-like 4 174 IPR036465 -
Lal23g1474 401 MobiDBLite consensus disorder prediction 241 285 - -
Lal23g1474 401 MobiDBLite consensus disorder prediction 316 345 - -
Lal23g1474 401 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 HOMOLOG ISOFORM X1 1 401 - -
Lal23g1474 401 CDD VWA_26S_proteasome_subunit 1 188 - -
Lal23g1474 401 MobiDBLite consensus disorder prediction 241 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1474 Lal-Chr23 15072836 15077472 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1474 K03029 - gmx:100814594 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1474 23 15072836 15077472 Lal23g1474 23 15072836 15077472 ECH
Lal16g0135 16 803690 812810 Lal23g1474 23 15072836 15077472 LSH
Lal15g0094 15 645295 649366 Lal23g1474 23 15072836 15077472 LSH