Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1472 ATGTCTACTTCAACTCAATCTTATATCTTCACTTTCCTCATTTTATTTTTCCTTCAATTCATCAAAGGATCGTATTCAACGACATTCAATATAGTAAACAAGTGCAGCTACACAGTTTGGCCAGGGATTTTAACCGGTGCCGGAACACCGCCTCTCTCCACCACGGGTTTCACCCTCGCTCCCGGTGACTCCAACACCATCCTCATCCCCGCCGCTTGGTCCGGCCGCATATGGGGTCGCACCCTCTGTTCACAGGACACCACCACCGAAAAATTCTCCTGCATCACCGGTGACTGCGACTCTTCCACCGAAGAATGCGCCGGCGGAGGCGCTGCACCACCTGCAACTCTAGCAGAATTCACCTTGAACGGTGCTGGAGGGCTCGACTTCTATGACGTCAGCCTCGTCGACGGTTACAACCTCCCAATATCAGTGGAGCCTCAGGGCGGGACCGGTGCCGGGAATTGCACCGCTACGGGTTGCGTGGAGGACTTGAACGCGGGGTGCCCGACTGAATTGACGGTGGTTAACGGCGAAGAGAGTGTGGCTTGTAAAAGCGCGTGTGAAGCATTTGGGGATCCGCAATATTGCTGCAGTGGCGCTTACGCGACGCCAGAAACGTGCAAACCTAGCTCATACTCGCAGTTCTTCAAGAGCGCGTGTCCACGCGCTTACAGCTACGCTTATGACGATGGCACTAGCACTTTCACTTGTGCCTCTGCCGATTACATTGTCACTTTTTGTCCCGTACCCTCCACTAGTTCAATCAAGTCAAGGAATCCAAAGGCGGTGAATGTCTCTGTAGGTTATGTGGATGTGACACCAAACAATTTCATGGCGGTGGCTGTTGTTACAGCTTCTGTTTTGTTGTCATTTTGGTGA 882 0.5227 MSTSTQSYIFTFLILFFLQFIKGSYSTTFNIVNKCSYTVWPGILTGAGTPPLSTTGFTLAPGDSNTILIPAAWSGRIWGRTLCSQDTTTEKFSCITGDCDSSTEECAGGGAAPPATLAEFTLNGAGGLDFYDVSLVDGYNLPISVEPQGGTGAGNCTATGCVEDLNAGCPTELTVVNGEESVACKSACEAFGDPQYCCSGAYATPETCKPSSYSQFFKSACPRAYSYAYDDGTSTFTCASADYIVTFCPVPSTSSIKSRNPKAVNVSVGYVDVTPNNFMAVAVVTASVLLSFW 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1472 293 CDD TLP-PA 28 248 - -
Lal23g1472 293 PRINTS Pathogenesis-related protein signature 28 40 IPR001938 -
Lal23g1472 293 PRINTS Pathogenesis-related protein signature 76 87 IPR001938 -
Lal23g1472 293 PRINTS Pathogenesis-related protein signature 129 145 IPR001938 -
Lal23g1472 293 PRINTS Pathogenesis-related protein signature 239 248 IPR001938 -
Lal23g1472 293 PIRSF PR5 1 289 IPR001938 -
Lal23g1472 293 SMART tha2 29 249 IPR001938 -
Lal23g1472 293 PANTHER OS03G0233200 PROTEIN 7 266 IPR001938 -
Lal23g1472 293 Gene3D Thaumatin 27 249 IPR037176 -
Lal23g1472 293 SUPERFAMILY Osmotin, thaumatin-like protein 27 249 IPR037176 -
Lal23g1472 293 ProSiteProfiles Thaumatin family profile. 26 249 IPR001938 -
Lal23g1472 293 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 7 266 - -
Lal23g1472 293 Pfam Thaumatin family 33 249 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1472 Lal-Chr23 15065409 15067143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1472 10 249 Receptor kinase-like Gene Family AT5G38280 49.798 1.29e-79 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1472 - - lang:109331061 478.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1472 23 15065409 15067143 Lal23g1472 23 15065409 15067143 ECH
Lal1g0147 1 956211 959554 Lal23g1472 23 15065409 15067143 ECH
Lal15g1517 15 17306836 17309531 Lal23g1472 23 15065409 15067143 LSH
Lal23g1472 23 15065409 15067143 Lal15g1517 15 17306836 17309531 PCT
Lal15g1517 15 17306836 17309531 Lal23g1472 23 15065409 15067143 PCT