Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1470 ATGCTTTCCTCTCTATATTTTCCTTCATCTCTCTCTTCCGTCAATGTATCCGTCTACGCCGTTGCTCCTCCGCTATGCCGCGTCAGATCCTCTCCTGTCGTTGCCTTTGCCACCGCCACCGCTACCGCCACATCTTCGGCTGAACCTCGCTCTACCTGGACGGATCAACCTAGGTCTTCTTCGTATCTGAACCCAAACGGCATGTCCTCTGCATCGCTCTACGATGTTCTAGGAATTCCGGCATCCGCCTCCAATCAGGAGATCAAAGCGGCGTACCGACGATTGGCCAGGGTTTGCCACCCTGACGTGGCGGAGATCGATCAGAAAAACTCGTCGGCGGACGAATTTATGCAGATTCATGCTGCGTACTCCACTCTATCAGATCCTGAAAAGCGCGCCAGCTATGATCGGAGTCTGTTTCGCAGTCGACAACGGCCTTTGTCGGCGGCGTCTGTGTTTTCTGGCTACACGGGTCGGAACTGGGAAACAGACCAGTGCTGGTAG 504 0.5456 MLSSLYFPSSLSSVNVSVYAVAPPLCRVRSSPVVAFATATATATSSAEPRSTWTDQPRSSSYLNPNGMSSASLYDVLGIPASASNQEIKAAYRRLARVCHPDVAEIDQKNSSADEFMQIHAAYSTLSDPEKRASYDRSLFRSRQRPLSAASVFSGYTGRNWETDQCW 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1470 167 CDD DnaJ 74 128 IPR001623 -
Lal23g1470 167 SUPERFAMILY Chaperone J-domain 68 142 IPR036869 -
Lal23g1470 167 SMART dnaj_3 71 131 IPR001623 -
Lal23g1470 167 PRINTS DnaJ domain signature 74 92 IPR001623 -
Lal23g1470 167 PRINTS DnaJ domain signature 92 107 IPR001623 -
Lal23g1470 167 PRINTS DnaJ domain signature 111 131 IPR001623 -
Lal23g1470 167 PRINTS DnaJ domain signature 131 150 IPR001623 -
Lal23g1470 167 ProSitePatterns Nt-dnaJ domain signature. 116 135 IPR018253 -
Lal23g1470 167 PANTHER - 1 167 - -
Lal23g1470 167 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 1 167 - -
Lal23g1470 167 ProSiteProfiles dnaJ domain profile. 72 139 IPR001623 -
Lal23g1470 167 Gene3D DnaJ domain 60 154 IPR036869 -
Lal23g1470 167 Pfam DnaJ domain 73 136 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1470 Lal-Chr23 15050988 15051491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1470 74 136 C2H2 Transcription Factor Family AT1G74250 43.284 9.53e-09 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1470 - - gmx:100800959 224.942
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1470 23 15050988 15051491 Lal23g1470 23 15050988 15051491 ECH
Lal1g0144 1 941000 941290 Lal23g1470 23 15050988 15051491 ECH
Lal16g0139 16 828250 828747 Lal23g1470 23 15050988 15051491 LSH