Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1458 ATGAAGCGTCAAAGGATATCGAACATGGTTTCGTGGGCTCCTGGACCTAATCTTTGTCAGGTAAAATTGTTTTTATCTGATGATTGCCCTTCAAAAGTTGGCCAGAAATCTCAAGAAAATCTTCAAGCAAAGACATTGACAATGTTGCCTTCAAGTACAAATGAATATAATGATTTACCTCCTGGGTTTGAAGGCAATTATTTTCTGAACCAATCAAAGGCTGAATTCTCTCACATTCCTCAGATTAAATGGGAGTGTGCTCCCCAGGTTACGCCTGATTCTCAGTGGCGTCTGGCAGCTGGTGAACATAGTAGAGAGAAAGTGGATCAAAAGCTTAGAGAAATGAGAGTGCTTGAAGCAGTTTATCCTCGCCTTTCTGCCATTCCTCCTAGCCCCTCTGTCTCTTCTGAAGTGGAACATGAAGATTATGATGATAATCTCACTCCTCTCATCCCTATCACTGAACCTGTTGAGGAAGAGGATTCTTTGGATATTACACCTGAAATGGCATTAACAAAACCTTATGACACTACTACTAATTTCCAGCAATGTACATCTACCATTCCCTCATCTTCATGTGGAGGGCCCTTACCTGGTTTGGAGCAAGATTTAACTGCCGCTGTCATTGCAGCCATCTCGGCGAGTAATGATCAAGGATGCTTGATTGATATGGATCTACTTGCTGAAATATTTAATGATCCAATATTGATTCAGAATTTGATTAAAGATCATGCAACTGCAGCAGCTGCTCCTGTTAATGCCTCCTCAAATAGTGTGGGTATACCCACTTCTGGATTGGAGCCTGCTACATTAGTTCCAGTGTCAAAACCTACTACACCTCCAAGTACAATGGGTTTACCTTCTGTGTCAAATAAAGTAACGAAATCGGCTTCATTCTTGATGCCGATACCTGGTAAGCCTGCCGATCCATCTGTTTCAATTTTCACCTATGCACTTCACAATAATGTAGGTAAATCAGAAATTCCGTCATTTGCACTACCTACACCTCTTCTTCAATCTCCACCTGCACCTACACCTGCACCTCTTAATCATAAACATGTCAACACAAATATTCAACACATGACTGATGGGGTGCTGCACACTTTAAATACCCATCCTTCTCAACAAGATTTAATTTTATCACATGGGCTAAGGCGATCAGAATCATTGAGCACCTTGCCCTCGTTTCCTTCTACTACAATGAATGGGCATGCAAGCTCAAACCAGGTAGGTTCCAATGCTAGTTCAGTTCCATATCAACCAAGTATCTGTTCAGCCTTTGCAGTAAAGAAAGATGCCAACTATTATAAGAACCTTATTAAGCAACATGGTGCAGATAAGAAAGATAAGCAGGACTCACAAATGGGTACCCATCTTAATAATTTTGAAGATTCTAAAACGGTTCAAAACTTTAAAATGGGGGAAATGATATCCAAAATCCAGAAGCCTTGCATATATTTTAAAAGCCCAAGGGGATGTCGAAATGGTTTTAACTGCCCCTATCAGCATGATATGTCAGTTCAATTGAGAGTTAGTAATGTCCTAGAGTTTCCAAATAAAAAAAGATTCAAACTGGGACCAGAAATTAACTGGAGGTTATAA 1602 0.4026 MKRQRISNMVSWAPGPNLCQVKLFLSDDCPSKVGQKSQENLQAKTLTMLPSSTNEYNDLPPGFEGNYFLNQSKAEFSHIPQIKWECAPQVTPDSQWRLAAGEHSREKVDQKLREMRVLEAVYPRLSAIPPSPSVSSEVEHEDYDDNLTPLIPITEPVEEEDSLDITPEMALTKPYDTTTNFQQCTSTIPSSSCGGPLPGLEQDLTAAVIAAISASNDQGCLIDMDLLAEIFNDPILIQNLIKDHATAAAAPVNASSNSVGIPTSGLEPATLVPVSKPTTPPSTMGLPSVSNKVTKSASFLMPIPGKPADPSVSIFTYALHNNVGKSEIPSFALPTPLLQSPPAPTPAPLNHKHVNTNIQHMTDGVLHTLNTHPSQQDLILSHGLRRSESLSTLPSFPSTTMNGHASSNQVGSNASSVPYQPSICSAFAVKKDANYYKNLIKQHGADKKDKQDSQMGTHLNNFEDSKTVQNFKMGEMISKIQKPCIYFKSPRGCRNGFNCPYQHDMSVQLRVSNVLEFPNKKRFKLGPEINWRL 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1458 533 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6-RELATED 1 525 - -
Lal23g1458 533 ProSiteProfiles Zinc finger C3H1-type profile. 478 506 IPR000571 GO:0046872
Lal23g1458 533 MobiDBLite consensus disorder prediction 393 413 - -
Lal23g1458 533 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 45-RELATED 1 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1458 Lal-Chr23 14950703 14955673 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1458 81 164 Homeobox Transcription Factor Family AT4G02560 42.697 1.07e-07 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lal23g1458 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1458 - - lang:109333118 626.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1458 23 14950703 14955673 Lal23g1458 23 14950703 14955673 ECH