Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1455 ATGCGAACACTCTGTGATGCTTGTGAGAGCGCAGCCGCTATTGTTTTCTGCGCCGCTGATGAGGCCGCACTCTGCCGTGCCTGTGATGAGAAGGTTCACATGTGTAATAAACTAGCTAGCAGGCATGTAAGGGTTGGTCTTGCAAGTCCGAGCGCCGTGCCTCGCTGTGACATATGTGAGAATGCACCTGCTTTCTTCTTTTGCGAGACAGATGGAAGTTCCCTTTGTCTGCAGTGTGATATGTTAGTTCATGTTGGAGGTAAAAGAACGCACGGAAGATATCTTCTTTTCAGGCAAAGAGTTGAGTTTCCTGGAGATAAACCTAGTCATGCAGAAAACCCACCTTCACAACCTGTGGAACCTGTTGAGACTAAAAGAGGACAAAATTCACTTCCCAGACTAAAGATGGGAGAGAAGCAACAAAATCATAGGATGCCTATGTTTCCATCGCCAGAACCTGGTGCTGATGGTCAGGCCAAGATGGAAACTGAAATGTTTGATTTGAACATGAATCCTAACAGAATACATGAACACACATCAAATAATCAGGTTAGAGTGCATGGAATGTAA 570 0.4526 MRTLCDACESAAAIVFCAADEAALCRACDEKVHMCNKLASRHVRVGLASPSAVPRCDICENAPAFFFCETDGSSLCLQCDMLVHVGGKRTHGRYLLFRQRVEFPGDKPSHAENPPSQPVEPVETKRGQNSLPRLKMGEKQQNHRMPMFPSPEPGADGQAKMETEMFDLNMNPNRIHEHTSNNQVRVHGM 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1455 189 CDD Bbox1_BBX-like 4 47 - -
Lal23g1455 189 Pfam B-box zinc finger 53 91 IPR000315 GO:0008270
Lal23g1455 189 Pfam B-box zinc finger 3 42 IPR000315 GO:0008270
Lal23g1455 189 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 183 - -
Lal23g1455 189 PANTHER SALT TOLERANCE-LIKE PROTEIN 1 183 - -
Lal23g1455 189 CDD Bbox1_BBX-like 56 96 - -
Lal23g1455 189 Gene3D Classic Zinc Finger 2 91 - -
Lal23g1455 189 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lal23g1455 189 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Lal23g1455 189 SUPERFAMILY B-box zinc-binding domain 49 86 - -
Lal23g1455 189 SMART bboxneu5 51 96 IPR000315 GO:0008270
Lal23g1455 189 SMART bboxneu5 1 47 IPR000315 GO:0008270
Lal23g1455 189 MobiDBLite consensus disorder prediction 105 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1455 Lal-Chr23 14914968 14916678 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1455 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 62.295 2.41e-75 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lal23g1455 zf-B_box 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1455 - - lang:109348718 345.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1455 23 14914968 14916678 Lal23g1455 23 14914968 14916678 ECH
Lal1g0202 1 1213746 1215029 Lal23g1455 23 14914968 14916678 ECH
Lal2g0122 2 745139 747631 Lal23g1455 23 14914968 14916678 ECH
Lal9g0139 9 898895 902104 Lal23g1455 23 14914968 14916678 ECH
Lal16g0147 16 892222 894686 Lal23g1455 23 14914968 14916678 LSH