Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1452 GTCAGACTCCATTACTCTCTCTCTCTCTCTCTAATCCAAATTCGATGTGTCCACTCATCAATTAAATCCCTTCTAATCTTAGGGTTTTATTTCTCTCTCAGCTCACCTCAACTTAACTCATGTTTATCAATTCATCATTCCTTCTTTCTCAGATTCGATTCTTTCTGCTTCGATTCACATATGGAACAACAACAACATCATCAACCACTTCAACAGCAGGAAACAACCGCCCTTAAGGATTTTCAGGAGTCGCAGCTTGTAGCAGTTCCCGTTTCGCTCGCTCCCGATGCTGACGTAGCAGCCATGGACGACGACGTTGTGTTGAAAAGGAAGCGGGGTCGTCCAGCTAAGGGTACTCCAAAAACGACACCGCCGTTGAAGCAGCAGCAACAGCAGCACGAGGATGAAGAAGATGTTTGTTTTATTTGCTTTGATGGTGGAAGCCTCGTTCTCTGTGATCGCCGGGGTTGCCCCAAAGCATATCATCCCGCTTGTATTAAGCGAGACGAGGCTTTCTTTCAATCAACGGCCAAATGGAATTGCGGTTGGCATATATGTAGCACCTGTCGAAAAGCATCACATTACATGTGCTATACATGCACGTATTCTTTGTGCAAGGGATGTACAAAATATTCTGATTTTGTCTGTGTCAGAGGAAATAAAGGCTTGTGTGCAATATGCATGAAAACTATAATGCTGTTTGAGAACAGTGCACGGGGAATCAAGTGTGGAGTGGATTTTGACGACAAAAGCAGTTGGGAGTATCTTTTCAAGGTGTATTGGATGTATTTGAAAGGAAAACTATCTTTAACATTTGATGAGCTCCTTCAAGCTACAAGCCCATGGAAAGATGCTGCTTCTATGAGTTGTAAGGTTGAAACCCCGCATAAACTTTATTATCGTAAAGATGACAAAGGTTCTAGTTCAGAGAATTCCTGTATTGACACAGAATCAAATAATTTGAAAAACAAGAAGCCTAAGAGACAGCCAAAGCTTCCTAGTAACGGGGATTGCTTTGATAGGATAACTTCAGGTGGTGGCAACTGTGCGTCTTTGCTTGAATCTACAAAATGGGCATCGAAGGAGCTTCTAGAATTTGTTGCACATATGAGAAATGGTGATACATCTCTCCAGTCTCAATTCGATGTCCAGACTCTCTTGCTGGAGTATGTGAAGAAAAACAATCTTCGTGATCCTCTACAGAAATGCCAAATTGTTTGCGACTCTAGACTAGTGAAATTGTTTGGAAAAGCACGTATGGGCCACATTGAAATGATAAAGCTCCTTGAATCCCACTTTCTTTTAAGAGACAATGGCCCTACAGAAAATACTATTCAGGCAGGAAATACGGATGCTGTTGCTAATGAAGGGGCGGCCATTGGCAATTACAATAAACAGTTTATTTTAGTCAATAATGATAATGGATGTAAAACAAGTAAAAATGCTGATGTGCTAGTGTCGCACAAGAATGCAAATGCATATGCTGCAATAAATGCTCATAACATTAATTTGATCTACTTGCGGCGAAGTCAGATGGACAGTCTAACTGAATTTGCTGAAAAGATTCATGAGAAGGTTGTTGGTTCTTTTGTACGGATAAGAATATGTAGTGGTGATCAAAAGCAAGAGATGTATAGGCTTGTCCAAGTTGTAGGTACTAGCAAGGTTGCTGAGTCTTACAAAATTGGCACAAGAACAACTGATATTGGGCTTGAAATTTTAAACTTAAACAGGAAAGAGGTCATATCAATAGACAAGATTTCGGATCAGGAGTTCTCTGAGGATGAATGCAAGCGCTTGCGTCAGAGTATAAAATATGGGCTCTCAAAGAGATTGTCTGTGGGAGAGATTTTTGACACAGCATTGGCACTTCAAGCAATGAGAGTCAATGATTTGCTGGAAGCTGAGATATTGCGGCTAACTCATCTGCGTGATAGAGCAAGTGAAAAGGGGCATAATAAAGAATATCCCTTGTCATTTATTTCCTTACTATCTTTCTTCCTCTCCCAATATGCTCAGCTGTGGCTATTGAACTCCCCGGAGGAACGACAGCGCATGCTGCATGCAATTCCGGAGATTGTCTCTGACCCCAATTTGGAGTCGATGTTTGAGTCTGATGAAGATGACAGAGGGTCAGATGAAAAGAAGCAAGATGGCAGTATAAGGTCAAATAGTCCTGGATTTGATAGGAGAGAGAGGGGACCTCTTTGTTCAAGAAGTGTGGACGGTGTCTTGAATGATGTTGGATGCAAAACACAGAACTTGCTGGCTACCAATGAGCCAATTGGGAATATATGCATAGTAAAGAATAACAGCCCTAATGATACAGCAATTAATGATATTAGCACTAAAGTACTTGTGAGGTCAGAAGCATCTTCTGTTGCCCTGGACATTTCATCATCACTGCTCTCTATTGGGAGGGTGCAACCATTGAATGGCGTAAATGATAAATCGTGGAACTATCAGGATTTAGCTGGAAAGGTTCAGGGACCTTTTTCGATTTTGCAGTTGTATAAGTGGAGTGTAAGTGGACATTTTCCTCCAGATCTCAGAATATGGAGTATAGATGAGAAACAAGATAAATCTATGCTGTTAACTGATGTATTAAGTGGGGAGTGTTCCAAAAATGTCACATTACCATACAACAACCAACTGCTTTCTCTAGTGAGCAGTGTTGCTTTGGGCAGTAATCTGAATAGTCAGGATGGTGGGAGAAGTGCAACATGCAATGGAAGTCATGCAGACAGCCCAAGTATTGCGCAGCATGGGGAGAAGAAGGTGGATGATCAGTCTAATGGTAAAGACGAGTCTGTTAGGAGCAATAGATTGAATGAAAATCCCCAAGTATACCATTCACCACCTTCAAGTGCTTTCTCTGTGAACCTGAATGAGAACTCTCCTTACGAATTAAGGGAAAGTCATAAGATTAAGGGAAATACTAAAGATAATGGAAATTATGACTTGAACAGGACTTTTGAGGGCCAGAGTAATAGTGGGCAGAGTTATCAGAAGCAATCAGATAGTGAAGATAATTTGGGACAATCTTCTGGACAAAACAGGAGACACCCTCATGTAAATACATCTTCCAGCTGCTTGGTTAATACACCGGATCCTGATTCTGTGACAAAAACATCGCCACAGAAGCTGGGATTTGATATGCATATTCCCGCTTCCCCTCCAGTGTGTAATGTTGCATCTACATGGCAGACAATCATTGGTGAACCCAATGATTTTGATGAATCAGTTTCAGATCTGTTGGCAGAAGTGGAGGCAATGGAGTCGCTTGGTGGTGGCTTGGAATCTCCCACTTCAATAATGAAACGTGGCGAGGAACTGGCTGATGGTTCTAAAAATGATTGTCTTACTTTTGCAGATGGGCTTGACCCCATGGTTGATGTAGGTAAAGGTGATGAGTTGAGCTCTGCAACTGATTTGCACTTATCATCTCAATCCACAGTTGCACAGGAACAAAGAACATTACACCAAGCAGATATACATCACCATCAAAGATTATCTGAGGGCAATTCCTCAAGAAGTTCTGAGGTTGAGGTGAGTGCAAAGAAAATTAGTGTTATTTCAGGTAATCAACGGGAGCCAGGCGAAATTTCACCCATTAATCAGTCTTCTGAAACCTGGGGCATGCCTACAGACACCACATGGAGACTTGGGTCGAAGAATACAACATTAGGATGGGGTGGAGTAGATCAAGGAAATGCAAACTTGAGTTGGGGAGTAGAACAAACAACACCACATGAGAGCCGGAACACAATTTCATACACTTCCTTCTTAACTATGGGCATTGAGGAAAGCCAAACAAAATATGGCAATGATCAATTTTCTGTGCCCAGAGATAGGGGCTTTCATAGTTATGGTAGGGAATCAGGTTTTGGTAGAGGCAGAACTGCATGGAATAGGCAACCATCATATGGTGTTGGAAATGGAGGTTCGTACAGGCCTCCACCCAAAGGACAGCGAGTATGTAAATTTTATGAAAGTGGGTATTGTAAAAAGGGAGCATCCTGCCATTACTTACACCCATGA 4041 0.4182 VRLHYSLSLSLIQIRCVHSSIKSLLILGFYFSLSSPQLNSCLSIHHSFFLRFDSFCFDSHMEQQQHHQPLQQQETTALKDFQESQLVAVPVSLAPDADVAAMDDDVVLKRKRGRPAKGTPKTTPPLKQQQQQHEDEEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFQSTAKWNCGWHICSTCRKASHYMCYTCTYSLCKGCTKYSDFVCVRGNKGLCAICMKTIMLFENSARGIKCGVDFDDKSSWEYLFKVYWMYLKGKLSLTFDELLQATSPWKDAASMSCKVETPHKLYYRKDDKGSSSENSCIDTESNNLKNKKPKRQPKLPSNGDCFDRITSGGGNCASLLESTKWASKELLEFVAHMRNGDTSLQSQFDVQTLLLEYVKKNNLRDPLQKCQIVCDSRLVKLFGKARMGHIEMIKLLESHFLLRDNGPTENTIQAGNTDAVANEGAAIGNYNKQFILVNNDNGCKTSKNADVLVSHKNANAYAAINAHNINLIYLRRSQMDSLTEFAEKIHEKVVGSFVRIRICSGDQKQEMYRLVQVVGTSKVAESYKIGTRTTDIGLEILNLNRKEVISIDKISDQEFSEDECKRLRQSIKYGLSKRLSVGEIFDTALALQAMRVNDLLEAEILRLTHLRDRASEKGHNKEYPLSFISLLSFFLSQYAQLWLLNSPEERQRMLHAIPEIVSDPNLESMFESDEDDRGSDEKKQDGSIRSNSPGFDRRERGPLCSRSVDGVLNDVGCKTQNLLATNEPIGNICIVKNNSPNDTAINDISTKVLVRSEASSVALDISSSLLSIGRVQPLNGVNDKSWNYQDLAGKVQGPFSILQLYKWSVSGHFPPDLRIWSIDEKQDKSMLLTDVLSGECSKNVTLPYNNQLLSLVSSVALGSNLNSQDGGRSATCNGSHADSPSIAQHGEKKVDDQSNGKDESVRSNRLNENPQVYHSPPSSAFSVNLNENSPYELRESHKIKGNTKDNGNYDLNRTFEGQSNSGQSYQKQSDSEDNLGQSSGQNRRHPHVNTSSSCLVNTPDPDSVTKTSPQKLGFDMHIPASPPVCNVASTWQTIIGEPNDFDESVSDLLAEVEAMESLGGGLESPTSIMKRGEELADGSKNDCLTFADGLDPMVDVGKGDELSSATDLHLSSQSTVAQEQRTLHQADIHHHQRLSEGNSSRSSEVEVSAKKISVISGNQREPGEISPINQSSETWGMPTDTTWRLGSKNTTLGWGGVDQGNANLSWGVEQTTPHESRNTISYTSFLTMGIEESQTKYGNDQFSVPRDRGFHSYGRESGFGRGRTAWNRQPSYGVGNGGSYRPPPKGQRVCKFYESGYCKKGASCHYLHP 1346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1452 1346 CDD SWIB-MDM2_like 358 433 - -
Lal23g1452 1346 SMART rtf1 496 606 IPR004343 GO:0003677
Lal23g1452 1346 MobiDBLite consensus disorder prediction 110 132 - -
Lal23g1452 1346 CDD PHD5_NSD 139 184 - -
Lal23g1452 1346 SUPERFAMILY FYVE/PHD zinc finger 134 192 IPR011011 -
Lal23g1452 1346 MobiDBLite consensus disorder prediction 919 941 - -
Lal23g1452 1346 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 63 1048 - -
Lal23g1452 1346 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44-RELATED 1059 1346 - -
Lal23g1452 1346 SUPERFAMILY SWIB/MDM2 domain 356 434 IPR036885 -
Lal23g1452 1346 Gene3D - 497 626 IPR036128 GO:0003677
Lal23g1452 1346 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 1323 1346 IPR000571 GO:0046872
Lal23g1452 1346 Gene3D SWIB/MDM2 domain 348 440 IPR036885 -
Lal23g1452 1346 MobiDBLite consensus disorder prediction 698 735 - -
Lal23g1452 1346 MobiDBLite consensus disorder prediction 704 735 - -
Lal23g1452 1346 SMART swib_2 367 438 IPR019835 -
Lal23g1452 1346 SUPERFAMILY Plus3-like 497 617 IPR036128 GO:0003677
Lal23g1452 1346 ProSiteProfiles Zinc finger PHD-type profile. 137 203 IPR019787 -
Lal23g1452 1346 MobiDBLite consensus disorder prediction 303 334 - -
Lal23g1452 1346 MobiDBLite consensus disorder prediction 942 967 - -
Lal23g1452 1346 ProSiteProfiles Zinc finger C3H1-type profile. 1321 1346 IPR000571 GO:0046872
Lal23g1452 1346 ProSitePatterns Zinc finger PHD-type signature. 140 200 IPR019786 -
Lal23g1452 1346 Gene3D - 818 874 IPR035445 -
Lal23g1452 1346 MobiDBLite consensus disorder prediction 899 917 - -
Lal23g1452 1346 ProSiteProfiles GYF domain profile. 816 870 IPR003169 GO:0005515
Lal23g1452 1346 Pfam Plus-3 domain 501 604 IPR004343 GO:0003677
Lal23g1452 1346 SMART PHD_3 139 185 IPR001965 -
Lal23g1452 1346 MobiDBLite consensus disorder prediction 982 1047 - -
Lal23g1452 1346 Pfam SWIB/MDM2 domain 360 433 IPR003121 -
Lal23g1452 1346 Coils Coil 630 650 - -
Lal23g1452 1346 Pfam GYF domain 819 859 IPR003169 GO:0005515
Lal23g1452 1346 SUPERFAMILY GYF domain 809 869 IPR035445 -
Lal23g1452 1346 ProSiteProfiles Plus3 domain profile. 496 629 IPR004343 GO:0003677
Lal23g1452 1346 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 1059 1346 - -
Lal23g1452 1346 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 44 63 1048 - -
Lal23g1452 1346 MobiDBLite consensus disorder prediction 899 1049 - -
Lal23g1452 1346 SMART gyf_5 817 872 IPR003169 GO:0005515
Lal23g1452 1346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 230 IPR013083 -
Lal23g1452 1346 SUPERFAMILY CCCH zinc finger 1321 1345 IPR036855 GO:0046872
Lal23g1452 1346 ProSiteProfiles SWIB/MDM2 domain profile. 352 435 IPR003121 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1452 Lal-Chr23 14889370 14896541 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1452 137 217 PHD Transcription Factor Family AT4G14920 34.568 1.86e-06 50.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Lal23g1452 Plus-3 7.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1452 - - aprc:113869503 1707.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1452 23 14889370 14896541 Lal23g1452 23 14889370 14896541 ECH