Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1451 ATGGAACAACCACTCGTGACTCAAGGTGCTGCTATGGATTTTAAGGACAACAAGTCGCAGTTTCTCGTACTCGCTCGCGATGCTGACGTGGCGGATAAAGACGGTGGTGGTAGTAGTAGTAATAGCGTTTTGAATAAGAAACGTGGCAATACTGTTCCCAAAACGACACCGCTTTCTAGGCCGAAGAAGAAGAAGGAAGAAGATGAAGACGTTTGTTTTATATGCTTTGACGGTGGAAGCCTTGTTCTTTGTGATCGACGGGGTTGCCCTAAAGCATATCACCCTGCGTGTATTAAGCGAGATGAAGCATTTTTCCGTTCAAAGGCTAAATGGAATTGCGGTTGGCATATATGCAGTGTTTGTGAGAAGGCATCCCATTATATGTGCTATACTTGTACACATTCTTTGTGCAAGGGATGTTCAAAAACTGCTGATTTTGTTGGTGTCAGGGGAAATAAAGGCTTTTGTGGAATATGCATGAAAACTATAATGCTGATCGAGAACAATGGCCAGGGAAATAATGCAAAGTGTGAAGTGGATTTCGATGACACAAGCAGCTGGGAGTATCTTTTCAAGGTTTATTGGACATCTTTGAAAGGAAACCTATCTTTAACATTTGATGAACTCCTTCAAGCTACAAACTCATGGAGACCTGCTTCTCTGAGCTGTAAAGTTGGAACTCCACATGAACTTCATCATTTTAAAGATGATAAAGGTTCTGGATCTGAGAAGTCCTGTATAGACATAGAATCCGATAATTTGGCTAACAAGAAGCCTAAGAGAGGTGATGAACATATACATGTTGGGGATTGTGTCTGGAATGATGTTGGATGCCGTGAGCTGTTCGGTGGTGTATGTACACACAAGAAACAGATCACCCCTAATGATGCCTCAATTGGTGACACCACTAATATAGGAGTTGTGAGATCAGAAATGCCTGGTGTCACGCTGGACATGTCATCATTGCTTCTCTCTAGAGGGATTGAGAAGCCACCTACTGATTGTGTGAATAATAAAGTGTGGCATTATCAGGATCCAGCTGGGAAGGTTCAAGGACCTTTTTCTATGTTGCAGTTGTACAAGTGGAAAGGAAGCGGACATTTCCCTTCAGATCTCAGAATATGGAGGATAGATGAGAAACAAGATTACTCTATATTGTTAACTGATGTACTAGATGGGAATCGTTCCAAAAGTGTGTTATTGCCACACAACAGCCAACTGCTGTCCTTAGGTCCCAGTGTTACTTTTGATAATAAAGATGATAGCCAGGGAAATGCAACAAGAAAGGAAATTCATGCAGACATCCGAGTTTTCGAGCAGAGTGGGGAGCAAAAGGTGGATGATATTTGTACACTGTCTAATGGTAAAGACGAATCTGTTAGGAGCAATGGATGGAACTCTTATTCTTCTACACCAACAGAAGGGATTAACAATGAGGGGCAAAGTGGACACTTTGAAAGGAGAGAGGAGTCATCAAAATACGAAATTTCTTGTCACAACCAGCCCCATGTATACCCTTCACTACCTTCGACTGTCTTTTCTGAGAATTTGAATGAGAACCCTTTGGATAAATTAAGGGAAGGCCATGGGATTGAGGCAAACCCTAAAGATAATGGAAATCATGACTTGAATAGGGCTTCTGGAGGCCAGAGTGATAGTGGGCAGAGTTATCAGAAGCAGTCAGATACTGAAGAGACTTCAGGGCAATCTTCTGGACAGAACTGGGAATGCCCTCAAGTAACTAATCCAGTGTGTAATGCTTCGACGTGGCTGACAATCTTTGGTGAACCTACTGATTGTGATGAGTCGGTTTCAGATCTGTTGGCTGAAGTGGAGGCAATGGAGTCTTGTGGTGGTGGCGTAGAATCTTCCACTTCAATCATGAAAGGTGCCGAGGAATTAACTGACGGTTCTAGAACTGATTTTCTCAGTTTTGTAGATGGGTTTAGCACAGTGTTTGATGCAGGTAAAGGTGATGCCCTGAGCTCCACGAATGATTTACCCTTAACATTTCAACCCACAGCAGCAGCGGAACCATTTCGTCAAACTGAAGTATCCTCAAAGAATATCTGGGGTGAATTCCTCAAAAAGTTCTGA 2097 0.4263 MEQPLVTQGAAMDFKDNKSQFLVLARDADVADKDGGGSSSNSVLNKKRGNTVPKTTPLSRPKKKKEEDEDVCFICFDGGSLVLCDRRGCPKAYHPACIKRDEAFFRSKAKWNCGWHICSVCEKASHYMCYTCTHSLCKGCSKTADFVGVRGNKGFCGICMKTIMLIENNGQGNNAKCEVDFDDTSSWEYLFKVYWTSLKGNLSLTFDELLQATNSWRPASLSCKVGTPHELHHFKDDKGSGSEKSCIDIESDNLANKKPKRGDEHIHVGDCVWNDVGCRELFGGVCTHKKQITPNDASIGDTTNIGVVRSEMPGVTLDMSSLLLSRGIEKPPTDCVNNKVWHYQDPAGKVQGPFSMLQLYKWKGSGHFPSDLRIWRIDEKQDYSILLTDVLDGNRSKSVLLPHNSQLLSLGPSVTFDNKDDSQGNATRKEIHADIRVFEQSGEQKVDDICTLSNGKDESVRSNGWNSYSSTPTEGINNEGQSGHFERREESSKYEISCHNQPHVYPSLPSTVFSENLNENPLDKLREGHGIEANPKDNGNHDLNRASGGQSDSGQSYQKQSDTEETSGQSSGQNWECPQVTNPVCNASTWLTIFGEPTDCDESVSDLLAEVEAMESCGGGVESSTSIMKGAEELTDGSRTDFLSFVDGFSTVFDAGKGDALSSTNDLPLTFQPTAAAEPFRQTEVSSKNIWGEFLKKF 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1451 698 ProSiteProfiles GYF domain profile. 338 392 IPR003169 GO:0005515
Lal23g1451 698 MobiDBLite consensus disorder prediction 30 62 - -
Lal23g1451 698 Gene3D - 340 396 IPR035445 -
Lal23g1451 698 CDD PHD5_NSD 71 116 - -
Lal23g1451 698 MobiDBLite consensus disorder prediction 521 576 - -
Lal23g1451 698 CDD GYF 338 391 IPR003169 GO:0005515
Lal23g1451 698 SMART gyf_5 339 394 IPR003169 GO:0005515
Lal23g1451 698 MobiDBLite consensus disorder prediction 521 539 - -
Lal23g1451 698 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 170 IPR013083 -
Lal23g1451 698 ProSiteProfiles Zinc finger PHD-type profile. 69 135 IPR019787 -
Lal23g1451 698 PANTHER UNCHARACTERIZED 26 262 - -
Lal23g1451 698 PANTHER UNCHARACTERIZED 308 686 - -
Lal23g1451 698 SMART PHD_3 71 117 IPR001965 -
Lal23g1451 698 MobiDBLite consensus disorder prediction 456 494 - -
Lal23g1451 698 MobiDBLite consensus disorder prediction 540 576 - -
Lal23g1451 698 Pfam GYF domain 341 384 IPR003169 GO:0005515
Lal23g1451 698 PANTHER BNAC08G48800D PROTEIN 26 262 - -
Lal23g1451 698 PANTHER BNAC08G48800D PROTEIN 308 686 - -
Lal23g1451 698 SUPERFAMILY FYVE/PHD zinc finger 45 117 IPR011011 -
Lal23g1451 698 MobiDBLite consensus disorder prediction 35 57 - -
Lal23g1451 698 SUPERFAMILY GYF domain 335 392 IPR035445 -
Lal23g1451 698 ProSitePatterns Zinc finger PHD-type signature. 72 132 IPR019786 -
Lal23g1451 698 MobiDBLite consensus disorder prediction 456 480 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1451 Lal-Chr23 14883876 14887585 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1451 68 157 PHD Transcription Factor Family AT5G36670 34.314 4.24e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1451 - - aip:107642933 786.563