Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1448 ATGCTTTACCAAACTCCCCATCCTCTCCACTTTCAATTTCATCCTTTCCCTTCTTCTTCTTCCATCTCTCCCCTTCAAACCACGTCATCTATTCTCTCTGTTCCTCTCTCTAAGGTTGAAACAGAAATGGAATATTGCATGGAAGGTGCGTTGAAAACATGTTTAAGGAAAGACATGACCGTGAAAGTGAGCCCACAAACCTTCATGGAGGATTTCAACGTCCAAAATGGCACACCTTGCGACGATTTTTTATTCGTGGATAACCTCCTTGACTTCTCGCATGTGGAACAACAACAAGACGAAGAAGAACCGCAACAACAACAACACAATGAAGGTGAAGGTGAAGATGAAGGCTCTGCTTGTGTCTCTCCTAAAAAAATCAACGAAAATTGTAACCTTTCTCTCAGTCATGAATTTCCTTCTTTGCCCACTACCGACCTCAGTGTTCCGGAGGATGTTGCTGACTTGGAGTGGTTGTCTAATTTTGTTGAGGATTCCTTCTCGGATTTCCCCACCGTAACAACAACCATGACGGAGAATCCAAAAACTTTTTTTGCTGAGAATCAAGCCAAGCCGTTAAACCCGGTTTTTATTCAACCATGTTTCAAAACTCCGGTTCCGGCAAAGGCAAGGAGCAAGCGAACCCGGTCGGGTATTCGGGTTTGGTCACTCGGTTCACCTTGCTTCACCGAGTCATCCACCAGCTCTACTTCCACCTCCTCCTCTTCTTCACCAACAAGTACTTTGCTAATTTACACCAACTTGGTCCAAAACCTCGACCAGGTTTGTTCACCAGCCAAAAAACCAAAGAAAAGGGTCTCTTCTGACGGTTCGGTACAGACACCACGGCGTTGCAGCCATTGCGGCGTTCAGAAAACCCCTCAGTGGCGAACCGGGCCACTGGGAGCAAAAACTCTCTGCAACGCTTGTGGGGTCAGGTTTAAGTCGGGTCGGCTCTTACCCGAATACAGACCAGCTTGTAGCCCAACGTTTTCAACCGAATTGCACTCCAACCACCACCGCAAAGTGCTCGAAATGCGGCGGAAGAAAGAGGGTACCGGTGGTGTTGAGACCGGTTTTGCACCTCCTCCGGTGGTCCCCACTTTTTGA 1110 0.4766 MLYQTPHPLHFQFHPFPSSSSISPLQTTSSILSVPLSKVETEMEYCMEGALKTCLRKDMTVKVSPQTFMEDFNVQNGTPCDDFLFVDNLLDFSHVEQQQDEEEPQQQQHNEGEGEDEGSACVSPKKINENCNLSLSHEFPSLPTTDLSVPEDVADLEWLSNFVEDSFSDFPTVTTTMTENPKTFFAENQAKPLNPVFIQPCFKTPVPAKARSKRTRSGIRVWSLGSPCFTESSTSSTSTSSSSSPTSTLLIYTNLVQNLDQVCSPAKKPKKRVSSDGSVQTPRRCSHCGVQKTPQWRTGPLGAKTLCNACGVRFKSGRLLPEYRPACSPTFSTELHSNHHRKVLEMRRKKEGTGGVETGFAPPPVVPTF 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1448 369 CDD ZnF_GATA 284 332 IPR000679 GO:0006355|GO:0043565
Lal23g1448 369 PANTHER GATA TRANSCRIPTION FACTOR 46 353 - -
Lal23g1448 369 Gene3D - 275 352 IPR013088 GO:0006355|GO:0008270
Lal23g1448 369 MobiDBLite consensus disorder prediction 96 122 - -
Lal23g1448 369 MobiDBLite consensus disorder prediction 349 369 - -
Lal23g1448 369 ProSitePatterns GATA-type zinc finger domain. 285 310 IPR000679 GO:0006355|GO:0043565
Lal23g1448 369 PANTHER GATA TRANSCRIPTION FACTOR 46 353 - -
Lal23g1448 369 ProSiteProfiles GATA-type zinc finger domain profile. 279 315 IPR000679 GO:0006355|GO:0043565
Lal23g1448 369 MobiDBLite consensus disorder prediction 266 291 - -
Lal23g1448 369 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 279 341 - -
Lal23g1448 369 MobiDBLite consensus disorder prediction 275 291 - -
Lal23g1448 369 SMART GATA_3 279 333 IPR000679 GO:0006355|GO:0043565
Lal23g1448 369 Pfam GATA zinc finger 285 319 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1448 Lal-Chr23 14864639 14866797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1448 48 369 C2C2-Gata Transcription Factor Family AT5G66320 48.696 5.15e-80 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal23g1448 GATA 4.9e-16 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1448 23 14864639 14866797 Lal23g1448 23 14864639 14866797 ECH
Lal16g0150 16 911195 913838 Lal23g1448 23 14864639 14866797 LSH