Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1446 ATGGGGCGTGGGAAGATAGAGATAAAGTTGATAGAGAACCCTACGAACAGGCAAGTTACCTACTCCAAGAGAAGGAATGGTATCTTCAAGAAAGCTCATGAACTCAGTGTTCTATGTGATGCTAAGGTTTCTCTTATCATGTTCTCCAAAAACAACAAGATGCACGAATACATCAGCCCTGGCCTCACTACAAAAAAGGTCATTGATCAGTATCAGAAGACCTTAGGGGATATCGATCTGTGGCGTTCCCACTATGAGAAAATGCTGCAAAACTTGAAGAAACTGAACGATATTAACCATAAACTCAGAAGACAGATCAGGCATAGAATAGGTGAGGGCCTGGACGATGATCTGAGCTTCCAGCAACTGCGCAATCTTGAAGAGGATATGGTTTCTTCCATTGGGAAAATACGTGAAAGAAAGTTTCATGTGATCAAAACTCGGACCGATACCTGCAGGAAAAAGGTTAGAAGCTTGGAGCAGATGAACGGAAATCTCCTACTTGAACTTGAAAAATGTGTGATCCATCCACAATTTCTTTTGCACGATGAAGGAGATCAGGAATCAGCAGTTGCACTGGCCAATGGTGCCTCAAACCTGTATGCATTCTGTCAGCACCATACTCATCTGAATCTTCATCATCACCTTGAAGATCATCAAGATCAAGGATTTAAAACTAATGATCTGCGCCTTGCTTAA 699 0.4206 MGRGKIEIKLIENPTNRQVTYSKRRNGIFKKAHELSVLCDAKVSLIMFSKNNKMHEYISPGLTTKKVIDQYQKTLGDIDLWRSHYEKMLQNLKKLNDINHKLRRQIRHRIGEGLDDDLSFQQLRNLEEDMVSSIGKIRERKFHVIKTRTDTCRKKVRSLEQMNGNLLLELEKCVIHPQFLLHDEGDQESAVALANGASNLYAFCQHHTHLNLHHHLEDHQDQGFKTNDLRLA 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1446 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Lal23g1446 232 Coils Coil 85 105 - -
Lal23g1446 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lal23g1446 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lal23g1446 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lal23g1446 232 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Lal23g1446 232 Gene3D - 13 79 IPR036879 GO:0003677|GO:0046983
Lal23g1446 232 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lal23g1446 232 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lal23g1446 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 232 - -
Lal23g1446 232 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lal23g1446 232 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Lal23g1446 232 PANTHER FLORAL HOMEOTIC PROTEIN DEFICIENS ISOFORM X1 1 232 - -
Lal23g1446 232 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lal23g1446 232 ProSiteProfiles K-box domain profile. 85 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1446 Lal-Chr23 14850166 14852357 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1446 1 219 MADS-box Gene Family AT3G54340 49.091 5.55e-67 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lal23g1446 K-box 5.2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1446 K09264 - gmx:100784496 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1446 23 14850166 14852357 Lal23g1446 23 14850166 14852357 ECH
Lal16g0151 16 919315 926979 Lal23g1446 23 14850166 14852357 LSH