Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1425 ATGAAGTGTACAAATCAATATGATGAAAAAGTGGAAGACATAAAGGAATATGGAAAAAAACGGAACAGAACATCTTATGATACGTTTGGTCATTGGCGGGGTTTTGCAAAGATGAATGATCTGATGACAAGTTCGTTCGTAAGTTATGTTGAACTGAAGAAACAGACACAGAAGGACATTGAAAGAGACTATCTTGACATTGAAGCAGGGCAACTCAACCCAACACAAGACCCTAACCTCTCTCATTTCTTCACAGAAGTTGATGGAATCAAGGTTGAAATGGAAGAGATCACCAATCTCTTAATTGATCTCAGACAACTGAATGAAGAGACAAAATCCATCCATAGTGCCAAAGTCCTTCGTGGCCTAAGGGACCGTATGGACTCTGACATGGTTGCAGTGTTGCGCAAGGCTGAGATTATCAAGGCAAGGCTTGAGGCACTTGACAAGTCCAACATTGCCAATCAAAGCATATCAGTATCCTACAAAGAGGGTACCCCCATTTATAGGACCAGGATGTCTGTCACAAATGGTTTGAGGGTCAAACTAAGGGACATGATGAATGATTTTCATTCCTTGAGGAACAAGATTCTATCTGAACACAAGGAAGATTTAAAGAGAAGGTACTATACTGCGACCGGTGAGGTTCCGAGTGAGGAGGCCATGGAGAAGATGATCTCAGGGAGCCTCAAAGTTGAGTTTTTGGCTGGGAAAACTGAGGCTGATATGGGTACTCAAGTTAGGCATGAGGCTGTGATGGATATCCAGAGGAGTTTGAATAAGCTCCACCAGGTTTTTCTTGACATGGCTATTCTTGTTGAGACCCAAGGAGAGAAGGTGGATAACATTGAGGATAATGTGGTAAAGGCAGGTAACTTCATCCATGGTGGGACCAATAGTCTTTACTTTGCCAATCAGATGAAGAATAGGATCAAAAAATGGGTCCTTTGGGTTTGTGCTGTGGTGCTGATTATATTGATAGTGTGCATCATTGCAATGTTGTCTTCTTGA 1011 0.4204 MKCTNQYDEKVEDIKEYGKKRNRTSYDTFGHWRGFAKMNDLMTSSFVSYVELKKQTQKDIERDYLDIEAGQLNPTQDPNLSHFFTEVDGIKVEMEEITNLLIDLRQLNEETKSIHSAKVLRGLRDRMDSDMVAVLRKAEIIKARLEALDKSNIANQSISVSYKEGTPIYRTRMSVTNGLRVKLRDMMNDFHSLRNKILSEHKEDLKRRYYTATGEVPSEEAMEKMISGSLKVEFLAGKTEADMGTQVRHEAVMDIQRSLNKLHQVFLDMAILVETQGEKVDNIEDNVVKAGNFIHGGTNSLYFANQMKNRIKKWVLWVCAVVLIILIVCIIAMLSS 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1425 336 SMART tSNARE_6 237 304 IPR000727 -
Lal23g1425 336 PANTHER SYNTAXIN 41 332 IPR045242 -
Lal23g1425 336 SUPERFAMILY t-snare proteins 77 297 IPR010989 GO:0016020|GO:0016192
Lal23g1425 336 SMART SynN_4 75 202 IPR006011 GO:0016020
Lal23g1425 336 Pfam Syntaxin 83 277 IPR006011 GO:0016020
Lal23g1425 336 Gene3D - 75 206 - -
Lal23g1425 336 CDD SNARE_syntaxin1-like 246 301 - -
Lal23g1425 336 CDD SynN 80 230 IPR006011 GO:0016020
Lal23g1425 336 Gene3D - 238 335 - -
Lal23g1425 336 PANTHER SYNTAXIN-112 41 332 - -
Lal23g1425 336 Coils Coil 90 110 - -
Lal23g1425 336 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 242 304 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1425 Lal-Chr23 14736852 14738642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1425 38 336 SNARE and Associated Proteins AT2G18260 57.468 8.46e-125 358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1425 K08486 - gmx:112997615 465.692
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1425 23 14736852 14738642 Lal23g1425 23 14736852 14738642 ECH
Lal15g0121 15 854836 856490 Lal23g1425 23 14736852 14738642 LSH