Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1422 ATGGCACTCCTAAAAATGAGTCCTTGGATCCGATTTTGTGGTGGGAGATTGACATGCTTTGCAAAAATGTCATTGAAAAGCATAGTACGAGAACTCAAGGAGATAAGGGATGGTATTGGTAGCATATCAAGGCGACGTGTAGGAAGCAGGCATTGGCACAGTCGTACAAAGTCACACATTGTTCCTGATGTCTCAGTAACTCCACTTGAACCTATTCGACAGGGACCATGGGCAAATCTACCTCCTGAGTTGCTCCTGGACATAATCCGGAGGGTTGAAGAGAGTGAGACATCTTGGCCTGCACGTGCTGTCATTGTTTCTTGTGCTTCAGTGTGTAAATCATGGAGGGTCGCTACAAAAGAGATTGTCAAGACTCCCGAGCAATGTGGAAGGCTCACATTTCCTATTTCATTGAAGCAGCCGGGTCCTCGTGAATCTCCAATACAGTGCTTTATCAGGAGGAACAGAGAAACTTCTACATTTCTATTGTATTTGGGTCTGGTGCCATTGGAGAAGGAGACTGATAAAATGTTATTAGCTGCCAAGAAGATAAGAAGGGCAAGAGGCACCGATTTTGTCATATCTCTAGTTGCAAATGAGTCTAATTTTTTGGGGACCAAGTTCACTATATATGACAACCAACCTCCATATGAAGCTGGAGTTCAACCAAATAGCCGTTCTAGCAGGAGATTTCACTCTAATCAGGTATCCCCAAGAGTTCCAGTATGTAACTACGTTGTTAGCACCATAGCTTATGAGCTCAATGTTCTTCGTACGAGAGGACCGAGAAGAATGCATTGCACCATGAACTCCATACCCATGTTAGCTATTCAGGAAGGGGGCAATGCTCCAACTCCCACTTATTTTCCACAAGTTATTAATGCACATTTTTCTCCCTCATCGGCACGGAAAGGAAAAGGTCCAGTTTCAGATTTAACCTCTGCAAGCCTCACAGAGCTACCAGTTCAGAACCAAGGCTCGGTTGAGCCTCTTGTACTTAAAAACAAGGCTCCCAGATGGCATGAGCAGCTGCAATGCTGGTGCCTAAACTTCAGGGGTCGTGTTACCGTGGCTTCTGTTAAGAACTTTCAACTTGTGGCTGCTGTTGATCCATCTCATAATGTTTCTGCTGCAGAACAAGAAAAGGTAATTTTGCAGTTTGGAAAGATTGGAAAAGACATATTTACCATGGATTACCGTTATCCACTCTCTGCCTCCCAAGCCTTTGCAATATGCTTAAGCAGCTTTGATACAAAACCAGCCTGTGAATGA 1272 0.4418 MALLKMSPWIRFCGGRLTCFAKMSLKSIVRELKEIRDGIGSISRRRVGSRHWHSRTKSHIVPDVSVTPLEPIRQGPWANLPPELLLDIIRRVEESETSWPARAVIVSCASVCKSWRVATKEIVKTPEQCGRLTFPISLKQPGPRESPIQCFIRRNRETSTFLLYLGLVPLEKETDKMLLAAKKIRRARGTDFVISLVANESNFLGTKFTIYDNQPPYEAGVQPNSRSSRRFHSNQVSPRVPVCNYVVSTIAYELNVLRTRGPRRMHCTMNSIPMLAIQEGGNAPTPTYFPQVINAHFSPSSARKGKGPVSDLTSASLTELPVQNQGSVEPLVLKNKAPRWHEQLQCWCLNFRGRVTVASVKNFQLVAAVDPSHNVSAAEQEKVILQFGKIGKDIFTMDYRYPLSASQAFAICLSSFDTKPACE 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1422 423 SUPERFAMILY F-box domain 71 121 IPR036047 GO:0005515
Lal23g1422 423 ProSitePatterns Tub family signature 2. 408 423 IPR018066 -
Lal23g1422 423 Gene3D - 71 127 - -
Lal23g1422 423 PANTHER TUBBY-LIKE F-BOX PROTEIN 23 423 - -
Lal23g1422 423 Pfam Tub family 138 418 IPR000007 -
Lal23g1422 423 ProSitePatterns Tub family signature 1. 351 364 IPR018066 -
Lal23g1422 423 PRINTS Tubby superfamily signature 195 219 IPR000007 -
Lal23g1422 423 PRINTS Tubby superfamily signature 244 271 IPR000007 -
Lal23g1422 423 PRINTS Tubby superfamily signature 333 350 IPR000007 -
Lal23g1422 423 PRINTS Tubby superfamily signature 351 367 IPR000007 -
Lal23g1422 423 PRINTS Tubby superfamily signature 380 399 IPR000007 -
Lal23g1422 423 PRINTS Tubby superfamily signature 401 423 IPR000007 -
Lal23g1422 423 Pfam F-box domain 77 124 IPR001810 GO:0005515
Lal23g1422 423 PANTHER TUBBY-RELATED 23 423 - -
Lal23g1422 423 Gene3D Tubby Protein; Chain A 135 423 IPR025659 -
Lal23g1422 423 SUPERFAMILY Tubby C-terminal domain-like 126 423 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1422 Lal-Chr23 14724574 14728035 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1422 23 423 TUB Transcription Factor Family AT2G18280 61.391 4.31e-172 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lal23g1422 Tub 1.8e-91 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1422 K19600 - gmx:100798958 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1422 23 14724574 14728035 Lal23g1422 23 14724574 14728035 ECH
Lal16g0166 16 1011972 1015317 Lal23g1422 23 14724574 14728035 LSH
Lal15g0122 15 860230 863306 Lal23g1422 23 14724574 14728035 LSH