Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1421 ATGGGAACTGATAGTGGTGAAGAAGTGAAGAGGTTACCAAATCCACTCTCTTTTAAGGTACATAGTAAAATGTGCATAGAACTCATGAAATTAGTTGACAGAATCTCAAGGATATTTCCAGACATAGAGGCGGCACGACCTCGATGTACATCAGGAATACAGAGTCTTTGTTTGCTGAACAACGCAATTGATAAAGCCAAACTACTTCTGCAACATTGTTCTGAATGCAGTAATCTCTACCTGGTTGTGACGGGGGACACAGTACTCTTAAGGTGCGAAAAGACAAGGAAATCACTAAAGCAAAGCTTAATCCAGATTCAGGGAATGCTTCCAGTTCTGTTGGCTGCAGCGGTTTCTGGAATAATTGATGATCTTGACTGTGCAAAATTTGTCATGGACTCTGCTGAAGAAGAGGCTGGAAGGGTTGTTAGAGAGTTGCTTCAGCAAGGTAATTCAGCCTCAGATTCAGTGGACAATTCTGAAGTTAAAGCTCTTAAGTTTGCAGCACCAAGACTTAATATTACATCTCCAAAGGCCATCTTAATAGAGAAACGAGCTATTAAGAAGTTGCTGGATAAAATTGGACCAAATGACCCGAAAAAGAAAATGATCTTGAACTATCTTCTGTACCTGCTGAAAAAGCATGGAAACCTCATTGTGGAAGAACAAACGGAGAAGGCCTATTCTCCTAAGGAAGAACCTATTGCAACCGATAACTCTAGTCATGACTCTCTTCAAGGGCATCATGATGAGTCAGAGTCCTTGAACTATGGTAATTGTAGAACTCAAACGAGTGAGTTGGGTACAGTTACACCCCCAGATGAATATAAATGCCCGATATCGTCAAGATTGATGTATGACCCTATTGTGATCGCTTCCGGGGTGACATATGAAAGGATGTGGATACAAAAGTGGTTTGATGAGGGTAATGATAAGTGCCCAAAAACTAGAAAGAAACTAGCTCATATGGGATTGACTCCTAACATTATCATGAAGGAGTTAATATCGAAGTGGTGCAGGAACAATGGCGTCTTCCTCCCCAATCCAAGTAGGCAAGCAGAAAACTTTATTTCATCGGAAGCTTCCTTCACTTCCATTAAGAGTCTTGGAAGTTATTACAACGACTTGAACTTGCCAATGGATCATAGTAACATGTCACTTGGATCCTTGGATACGAGTTATAGTTCAGATGTCTCACATGCTAAGGTTACCCATGGCTTAAATTTGATGTTGATGAAGAATAGTGACAATTCTCACAAAGATAGAGCTCAAGCAGAGATACAGGATACAGATTTGACACTTCTGTCTAAACTCCATGATCTTCAATGGGATTCTCAATGCAAGGTCATTGAAGATCTGAAAGACCATGTGAAAATCAATCACCAAGCCTTTTGTTCTGTATCACCTGAAGATTTCATTAAACCACTCGTCAAGTTTCTGAGCAATGCATATGATCAAAATGAGGTTAAAGCACTGAGAGCTGGAACTCAGCTGCTGTTGGAATTTGTGAACAACTGCAGGCATGATTTCTTTTCCCCTTTCTCAGCATGA 1551 0.4049 MGTDSGEEVKRLPNPLSFKVHSKMCIELMKLVDRISRIFPDIEAARPRCTSGIQSLCLLNNAIDKAKLLLQHCSECSNLYLVVTGDTVLLRCEKTRKSLKQSLIQIQGMLPVLLAAAVSGIIDDLDCAKFVMDSAEEEAGRVVRELLQQGNSASDSVDNSEVKALKFAAPRLNITSPKAILIEKRAIKKLLDKIGPNDPKKKMILNYLLYLLKKHGNLIVEEQTEKAYSPKEEPIATDNSSHDSLQGHHDESESLNYGNCRTQTSELGTVTPPDEYKCPISSRLMYDPIVIASGVTYERMWIQKWFDEGNDKCPKTRKKLAHMGLTPNIIMKELISKWCRNNGVFLPNPSRQAENFISSEASFTSIKSLGSYYNDLNLPMDHSNMSLGSLDTSYSSDVSHAKVTHGLNLMLMKNSDNSHKDRAQAEIQDTDLTLLSKLHDLQWDSQCKVIEDLKDHVKINHQAFCSVSPEDFIKPLVKFLSNAYDQNEVKALRAGTQLLLEFVNNCRHDFFSPFSA 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1421 516 MobiDBLite consensus disorder prediction 225 257 - -
Lal23g1421 516 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 2 509 - -
Lal23g1421 516 PANTHER U BOX DOMAIN-CONTAINING 2 509 - -
Lal23g1421 516 CDD RING-Ubox_PUB 276 318 IPR045210 -
Lal23g1421 516 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 344 IPR013083 -
Lal23g1421 516 Pfam U-box domain 273 342 IPR003613 GO:0004842|GO:0016567
Lal23g1421 516 ProSiteProfiles U-box domain profile. 271 345 IPR003613 GO:0004842|GO:0016567
Lal23g1421 516 SUPERFAMILY RING/U-box 262 348 - -
Lal23g1421 516 MobiDBLite consensus disorder prediction 225 250 - -
Lal23g1421 516 SMART Ubox_2 275 338 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1421 Lal-Chr23 14718364 14723627 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1421 15 507 U-box Gene Family AT4G36550 37.200 1.47e-102 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1421 - - mtr:MTR_5g020570 707.983
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1421 23 14718364 14723627 Lal23g1421 23 14718364 14723627 ECH