Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1417 ATGAGAGGCCAAGAAGACAAGGAAATAGAGATGCCAACCACTTTAGGTTACAATATAGATTCTTCTTCTTCTTCTTCCGAGCTGTCTTCACCAACTGCAGGTGAAAGAAGTGATCATCAACCTTTTCCTTCTTCTCAAACTCCCACATTAATCTTTAATGATCAACCTCAAACTTCACACCACAATAATCATCATCTTTATTCTCCTCTTGCAACCACTCAACTTCATCAATCTCAGGAACCAAGTACAGATCCAGATCTATGCTCATCTCCTATTGTCACAACAAGCATAACAACCACCCCAATTGCCAGCATACCAATTCCACCAAGAGCAGCCCCGCCACAATCAACTATAACCGCAACCGCAACCATAACCACATTGATCAGATACCGTGAATGTCTGAGGAACCACGCAGCCAGCATGGGGAGCCATGTGGTAGATGGATGTGGAGAATTCATGCCAAGTGGAGAAGAAGGCACCCCAGAATCACTTAAGTGTGCTGCTTGTGATTGCCACCGCAATTTCCACCGGAAAGAAACTGAAGGGGAACCTCAACAACATGCTTCTAATTATCACAACTATCACCCCAACAAGCACAACACTCACAATATAATACCTTCTCCTTCTCTTCCTCATCATAATCATACTCATCTCCAGTTTCATACACCATCTTCTTCTATGCATCAACATCATAGATTCTCTCATGGGGTTGCCAACCCTACAAGCATGATTCCTCCTATGATCGCCTTTGGAGGCGGTGGTGGCGGTGCGGCTGAGTCCTCAAGTGAAGATCTCAACATGTTTCAGTCTAATAGAGGGGGAGAGATATTAGTGCAGCCGCCATCAATGTCAAAGAAGAGGTTCAGGACAAAGTTCACACAGCAACAAAAGGATAGGATGATGGAGTTTGCTGAGAAGCTTGGGTGGAAGATCCAGAAACAAGATGAACAGGAAGTGCAACAATTCTGTTCTCAAGTTGGTGTCAGAAAACAGGTATTCAAGGTTTGGATGCACAATAACAAGCAAGCTATGAAGAAACAACAAATCTAA 1050 0.4371 MRGQEDKEIEMPTTLGYNIDSSSSSSELSSPTAGERSDHQPFPSSQTPTLIFNDQPQTSHHNNHHLYSPLATTQLHQSQEPSTDPDLCSSPIVTTSITTTPIASIPIPPRAAPPQSTITATATITTLIRYRECLRNHAASMGSHVVDGCGEFMPSGEEGTPESLKCAACDCHRNFHRKETEGEPQQHASNYHNYHPNKHNTHNIIPSPSLPHHNHTHLQFHTPSSSMHQHHRFSHGVANPTSMIPPMIAFGGGGGGAAESSSEDLNMFQSNRGGEILVQPPSMSKKRFRTKFTQQQKDRMMEFAEKLGWKIQKQDEQEVQQFCSQVGVRKQVFKVWMHNNKQAMKKQQI 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1417 349 MobiDBLite consensus disorder prediction 15 65 - -
Lal23g1417 349 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 130 179 IPR006456 -
Lal23g1417 349 SUPERFAMILY Homeodomain-like 280 346 IPR009057 -
Lal23g1417 349 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 285 342 IPR006455 -
Lal23g1417 349 ProSiteProfiles 'Homeobox' domain profile. 283 347 IPR001356 GO:0003677
Lal23g1417 349 Pfam ZF-HD protein dimerisation region 128 180 IPR006456 -
Lal23g1417 349 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 129 179 IPR006456 -
Lal23g1417 349 Gene3D - 278 346 - -
Lal23g1417 349 MobiDBLite consensus disorder prediction 1 65 - -
Lal23g1417 349 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 60 347 - -
Lal23g1417 349 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 60 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1417 Lal-Chr23 14699958 14701007 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1417 63 349 ZF-HD Transcription Factor Family AT2G18350 44.097 8.56e-70 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lal23g1417 ZF-HD_dimer 1.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1417 - - lang:109332583 366.311
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1417 23 14699958 14701007 Lal23g1417 23 14699958 14701007 ECH
Lal15g0124 15 871265 872317 Lal23g1417 23 14699958 14701007 LSH