Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1414 ATGATGCACCGTTCTTGCAATGACCCACATCAGGGACATGTGATGGGACACTGCACATGTGGTATGTTCCATAGCCAAACAAGTTCATTCTCTATGATATTCTCAATGCCAAACCACAAACCCTATGACTATGATCAGCATGAACCTGATATGTGTTCCTACACTGCTACTCCCTCTTCATCTAATGTGGACTGCACCCTCTCACTTGGAACGCCTTCCACCCGTTTCACAGAAGATGAAGAGAAGAGAAGCTCTCGACCCGTTTCTAACTTTTGCTGGGATTTACTACAACCCAACCACAGCACTCAGTCACAAACCAAGTCCAGCAGCAGAGGAACCGATAGTAACAATGCCATTGACTCTCTTCTTCCTCGTCGATGCGCAAATTGCGACACCTCTTCAACACCTCTTTGGAGGAATGGACCCCAAGGCCCAAAGTCACTCTGTAATGCCTGTGGGATCAGATTCAAGAAAGAAGAAAGAAGATCGAGTGCTGCTTCCGTCACGCCCATGGCGGCGTCCGGCGGTGTAGTGGACTCAGCGCAGATGTACAGTCACCATAACAACTCATGGTACGCACAGTCGCAGAGCCAGAATATGCAGTGCCTCTCGCCGGCGATGGCGAAAGATTTCCGGCTCATTGATGACGGGGATCTAGATTCCAATAACGGCATTCCCTTCTTGTCTTGGAGACTTAACGTCACAGACAGAACAAGCTTCGTTCACGACTTTACAAGATGA 741 0.4872 MMHRSCNDPHQGHVMGHCTCGMFHSQTSSFSMIFSMPNHKPYDYDQHEPDMCSYTATPSSSNVDCTLSLGTPSTRFTEDEEKRSSRPVSNFCWDLLQPNHSTQSQTKSSSRGTDSNNAIDSLLPRRCANCDTSSTPLWRNGPQGPKSLCNACGIRFKKEERRSSAASVTPMAASGGVVDSAQMYSHHNNSWYAQSQSQNMQCLSPAMAKDFRLIDDGDLDSNNGIPFLSWRLNVTDRTSFVHDFTR 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1414 246 Gene3D - 123 199 IPR013088 GO:0006355|GO:0008270
Lal23g1414 246 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 123 168 - -
Lal23g1414 246 MobiDBLite consensus disorder prediction 100 119 - -
Lal23g1414 246 Pfam GATA zinc finger 127 161 IPR000679 GO:0006355|GO:0043565
Lal23g1414 246 PANTHER GATA TRANSCRIPTION FACTOR 18 2 245 - -
Lal23g1414 246 CDD ZnF_GATA 126 158 IPR000679 GO:0006355|GO:0043565
Lal23g1414 246 ProSitePatterns GATA-type zinc finger domain. 127 152 IPR000679 GO:0006355|GO:0043565
Lal23g1414 246 ProSiteProfiles GATA-type zinc finger domain profile. 125 157 IPR000679 GO:0006355|GO:0043565
Lal23g1414 246 SMART GATA_3 121 176 IPR000679 GO:0006355|GO:0043565
Lal23g1414 246 PANTHER GATA TRANSCRIPTION FACTOR 18 2 245 IPR044272 GO:0003700|GO:0009908
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1414 Lal-Chr23 14682246 14683505 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1414 19 246 C2C2-Gata Transcription Factor Family AT3G50870 41.156 4.80e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lal23g1414 GATA 9.5e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1414 - - gmx:100790571 335.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1414 23 14682246 14683505 Lal23g1414 23 14682246 14683505 ECH
Lal16g0169 16 1023101 1025180 Lal23g1414 23 14682246 14683505 LSH
Lal15g0126 15 880071 882252 Lal23g1414 23 14682246 14683505 LSH