Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1401 ATGGATGCAATGAAAAACGAAGAGCCCGTTGAGTCACCGACTTCGGTGCTCGAAGACGAGGATGTTTGCGGTGGCCCGGAGGCTGAGCTTAAGGCTGAAGAAGAGGTGCTTTTAGATATTATAGATGATGGATCCTTGCTTTTACCAAAATCAATTGCTGAGGAGGAAGCGAAATTGATCAAACAACGGGCAAAGGAAGAAGAGGAACAGTGCGAGGAAGCGCCGGACCTCAATGAGACTCAGTTTAACAAATTGGATGAGCTTTTAACACAGACTAAACTCTACTCTGAGTTTCTGCTGGAGAAAATGGACGACATCACACTTAATGGGGGTGAGAAAGAGAATGGAGACGAGCAAGAGAGTGAGCCAGCTACAAAGAAGAAAGGCCGTAAAAGAAAAGCAGCCTCACAATGCAATACTGGGAAGGCCAAAAGGGCAGTTGCTGCCATGCTCACAAGATCTAAAGATAGTGTGAAGACTGAAGATATGAACATGAGTGAGGAGGACAGAATTGCGAAAGAGCAGAAGGAGCTTATGCCTTTACTGACAGGTGGAAAATTGAAATCTTATCAGTTAAAGGGTGTGAAATGGTTGATTTCCTTGTGGCAAAATGGATTGAATGGGATTCTTGCGGATCAAATGGGCCTGGGGAAGACAATCCAAACAATTGGGTTTCTTGCACATTTAAAAGGGAAAGGTCTGGATGGGCCATACATGATAATTGCTCCTCTATCAACCCTCTCAAATTGGGTGAATGAGCTTTCTAGGTTTGCTCCATCACTCCCTGCCGTTATATATCACGGGGACAAGAAACAGAGAGATGAAATCCGAAGGAAACTTATGCCTAGAAAAGTTGGCCCAAAATTTCCCATTGTGATCACTTCTTATGAGATTGCTTTAAGTGATGCTAGAAAATGTTTCATGTCATACAATTGGAAATATCTTGTTGTTGATGAGGGACACAGGCTCAAAAACTCGAAATGCAAATTAGTGAAGGCGTTGAAATGCTTAAATGTAGAAAATAAGCTTCTTCTATCTGGGACTCCTCTTCAGAATAACTTGGCGGAGTTATGGTCATTGTTGAACTTCCTTTTACCTGATATTTTCTCATCTCTTGAAGAATTCGAGTCATGGTTTAATCTGTCAGGAAAGTGCAATAATGGAGCAACCAAGGAAGAACTTGAAGAGAAAAGAAGAGCCCAAGTAGTAGCAAAGCTCCATGCCATACTTCGACCCTTTCTTCTGCGCAGGATGAAGACTGATGTCGAGCTGATGTTGCCAAGGAAGAAGGAAATTATTTTATATGCAACCATGACTGAGCATCAGAAGAAATTGCAGGATCATTTAATTAATAAGACAATGGAGAAGTATTTAGAAGAAAAATCATCAACTGGGCATGCCACCAGACCAATTAAAAATTTGTGTCTTCAACTTAGGAAGGTCTGCAATCATCCTGACCTTTTAGAGTCAGCCTTTGACGGTTCTTATCTGTATCCTCCTATAAATGAGATAGTTGACCAATGCGGAAAATTCCATTTGCTCGTGCGGTTGTTGGAACAGTTGTTTGCACGGAAGCACAAAGTTCTGATATTCAGTCAGTGGACTAAAGTGTTAGATTTAATGGACTATTATTTTAGCGAGAAGGGCTTCGAAGTTTGCAGGATTGATGGTAATGTGAATCTTGATGACAGGAAACGGCAGATTGAGAACTTCGGTGATCCAAACAGCAAATACAAGATCTTCCTTCTTTCTACTAGGGCTGGTGGATTGGGAATTAACCTCACTGCAGCTGACACTTGCATTCTTTATGACAGTGACTGGAACCCCCAGATGGATTTACAGGCCATGGATAGATGTCATAGAATAGGTCAGATGAAGCCTGTTCATGTTTACAGGCTCTCAACTGCACAATCTATAGAGGTTCGCATGTTGAAAAGAGCTTTCAGCAAGTTGAAGCTTGAGCATGTGGTGATTGGGAAAGGACAGTTTCATCAAGAACGTGCAAAGCCTGTCAGTGTCGATGAATTGGAGGAAGAGGATATTTTGGCATTGCTTCGGGATGAAGAAACAGCTGAAGACAAGATGATACAAACAGGTATTAGTGATGAAGACCTGATGAAGGTGTTGGATCGCAGCGATCTTGTTGCCTACAATTCAAAGGATGGCGAAGACTCCAAAGCTCCGGTCAGTTCGTTTCCCCTTAATGGGCCTGGGTGGGAGGTGGTGATTCCAACTGCTTCCGGGGGCATGCTTTCTACTCTTAATGGTTAA 2271 0.4258 MDAMKNEEPVESPTSVLEDEDVCGGPEAELKAEEEVLLDIIDDGSLLLPKSIAEEEAKLIKQRAKEEEEQCEEAPDLNETQFNKLDELLTQTKLYSEFLLEKMDDITLNGGEKENGDEQESEPATKKKGRKRKAASQCNTGKAKRAVAAMLTRSKDSVKTEDMNMSEEDRIAKEQKELMPLLTGGKLKSYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLAHLKGKGLDGPYMIIAPLSTLSNWVNELSRFAPSLPAVIYHGDKKQRDEIRRKLMPRKVGPKFPIVITSYEIALSDARKCFMSYNWKYLVVDEGHRLKNSKCKLVKALKCLNVENKLLLSGTPLQNNLAELWSLLNFLLPDIFSSLEEFESWFNLSGKCNNGATKEELEEKRRAQVVAKLHAILRPFLLRRMKTDVELMLPRKKEIILYATMTEHQKKLQDHLINKTMEKYLEEKSSTGHATRPIKNLCLQLRKVCNHPDLLESAFDGSYLYPPINEIVDQCGKFHLLVRLLEQLFARKHKVLIFSQWTKVLDLMDYYFSEKGFEVCRIDGNVNLDDRKRQIENFGDPNSKYKIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQMKPVHVYRLSTAQSIEVRMLKRAFSKLKLEHVVIGKGQFHQERAKPVSVDELEEEDILALLRDEETAEDKMIQTGISDEDLMKVLDRSDLVAYNSKDGEDSKAPVSSFPLNGPGWEVVIPTASGGMLSTLNG 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1401 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 158 417 IPR027417 -
Lal23g1401 756 PANTHER SNF2/RAD54 HELICASE FAMILY 10 755 - -
Lal23g1401 756 SMART ultradead3 183 378 IPR014001 -
Lal23g1401 756 Gene3D - 423 724 IPR027417 -
Lal23g1401 756 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 10 755 - -
Lal23g1401 756 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 517 677 IPR001650 -
Lal23g1401 756 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 199 367 IPR014001 -
Lal23g1401 756 MobiDBLite consensus disorder prediction 1 28 - -
Lal23g1401 756 Coils Coil 50 74 - -
Lal23g1401 756 MobiDBLite consensus disorder prediction 109 141 - -
Lal23g1401 756 CDD SF2_C_SNF 499 633 - -
Lal23g1401 756 Pfam SNF2-related domain 190 487 IPR000330 GO:0005524|GO:0140658
Lal23g1401 756 MobiDBLite consensus disorder prediction 109 127 - -
Lal23g1401 756 SMART helicmild6 539 623 IPR001650 -
Lal23g1401 756 Gene3D - 152 416 IPR038718 -
Lal23g1401 756 Pfam Helicase conserved C-terminal domain 510 623 IPR001650 -
Lal23g1401 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 419 702 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1401 Lal-Chr23 14601544 14607611 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1401 173 644 RAD5 or RAD16-like Gene Family AT3G16600 25.480 8.59e-28 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal23g1401 SNF2_N 3.4e-65 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1401 K19001 - gmx:100777687 1187.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1401 23 14601544 14607611 Lal23g1401 23 14601544 14607611 ECH