Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1390 ATGGAACAGCAAATTGTAGAGCCATCAGTCTCAGAGCTCTTCGAACTCTCACTCACGTGCTCCTTCAAGAACACTGGACTAGGAACAAGTGGCGCAGATGCTGTTGATTTTGATGATGATTTTGTCTTCAACATTGATCCTAACTTGCTATTGGACCGTCTTAAATTATCCTTTGACCACATCATCGGAGAAGGATCTTACTCTATTGTGTATGATGGAAGGTATGAATGGCATGCTGTGGCTATTAAGACAATTCTCCCAGGTAGAACGAAGGATGCTTCACCTGATTGTAAGGCCAGATTTCAGCGAGAGGTCAACTTGTTATCAAAAGTCAAACATAAAAATATTGTCAAGTTTATTGGCGCTTCTGTGGAGCCAACGATGGTGATAGTAACAGAATTATTGGAAGGTGGTTCACTTCTGAAAAACTTGAAGAGAATCTATCCTATGACTCTGGATTTGGAGCAATGTCTAAGTTTTGCTCTGGACATTTCTCAAGCTATGGAATATTTGCATGCAAAAGGAATCATTCACCGTGATCTGAAGCCTAGTAATTTACTTCTGACAAAAGAAAAGAAGCATGTCAAAGTTGCTGATTTTGGGATAGCCAGAGAGGAGGTATGTGATGGCATGACTTCTGAGGCTGGTACTTACCGATATATGGCTCCTGAGTTATTCAGCAAAAGTCCACTTCCAAAGGGAGCAAAGAAATGCTATGATCGTAAGGCAGATGTTTACAGCTTTGCAATGGTTCTATGGTCATTGGTAAAAAACGAAACTCCATTCAAAGATAGGAATGATTTGATGGCAGCATATGCTGCAGCAAATAACATGAGGCCTAGTCTGCATGAGTTTCCAGAATGTCTAGTTCCCCTGGTGAAGTCTTGTTGGGAAGAAGACCCAAAGCTCCGACCAGAATTCCAAGAGATCACAACCACTCTGACAACTCTACTCCAAATTTGCCGTTCAAAAGGGACAATTCCATTGGCCAGGATAGTTGAGAGTGATGAAGAATTGAAAAGCAACAAGGACGGACAAAGATCAAAAGCAAAGGGCCCAACGTCCCTACAGTCAGTGGAAAACATTTCCAATCGTAGGACTATAAAACCCAATGGTTGGATAGATGTTAAGGGAGAGTCTATGTCTCAGCGCAAAGCAAAAAAGACCCCCAAAGCTGATTTCTCTGCAAAAACCAAGCAAAAATGGAATAATACAAAACTCAAGTTTCTCTCTTTCTTCAAACTCTGCTTTCGCATTTAA 1260 0.4119 MEQQIVEPSVSELFELSLTCSFKNTGLGTSGADAVDFDDDFVFNIDPNLLLDRLKLSFDHIIGEGSYSIVYDGRYEWHAVAIKTILPGRTKDASPDCKARFQREVNLLSKVKHKNIVKFIGASVEPTMVIVTELLEGGSLLKNLKRIYPMTLDLEQCLSFALDISQAMEYLHAKGIIHRDLKPSNLLLTKEKKHVKVADFGIAREEVCDGMTSEAGTYRYMAPELFSKSPLPKGAKKCYDRKADVYSFAMVLWSLVKNETPFKDRNDLMAAYAAANNMRPSLHEFPECLVPLVKSCWEEDPKLRPEFQEITTTLTTLLQICRSKGTIPLARIVESDEELKSNKDGQRSKAKGPTSLQSVENISNRRTIKPNGWIDVKGESMSQRKAKKTPKADFSAKTKQKWNNTKLKFLSFFKLCFRI 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1390 419 MobiDBLite consensus disorder prediction 380 395 - -
Lal23g1390 419 SUPERFAMILY Protein kinase-like (PK-like) 56 324 IPR011009 -
Lal23g1390 419 MobiDBLite consensus disorder prediction 377 397 - -
Lal23g1390 419 ProSitePatterns Protein kinases ATP-binding region signature. 62 83 IPR017441 GO:0005524
Lal23g1390 419 SMART serkin_6 56 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g1390 419 MobiDBLite consensus disorder prediction 338 358 - -
Lal23g1390 419 PANTHER PROTEIN KINASE ATN1-LIKE PROTEIN-RELATED 19 349 - -
Lal23g1390 419 PRINTS Tyrosine kinase catalytic domain signature 132 145 IPR001245 GO:0004672|GO:0006468
Lal23g1390 419 PRINTS Tyrosine kinase catalytic domain signature 170 188 IPR001245 GO:0004672|GO:0006468
Lal23g1390 419 PRINTS Tyrosine kinase catalytic domain signature 243 265 IPR001245 GO:0004672|GO:0006468
Lal23g1390 419 PRINTS Tyrosine kinase catalytic domain signature 285 307 IPR001245 GO:0004672|GO:0006468
Lal23g1390 419 CDD STKc_MAP3K-like 62 310 - -
Lal23g1390 419 ProSitePatterns Serine/Threonine protein kinases active-site signature. 176 188 IPR008271 GO:0004672|GO:0006468
Lal23g1390 419 Pfam Protein tyrosine and serine/threonine kinase 57 314 IPR001245 GO:0004672|GO:0006468
Lal23g1390 419 ProSiteProfiles Protein kinase domain profile. 56 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal23g1390 419 Gene3D Transferase(Phosphotransferase) domain 1 137 358 - -
Lal23g1390 419 PANTHER SERINE-THREONINE PROTEIN KINASE 19 349 - -
Lal23g1390 419 Gene3D Phosphorylase Kinase; domain 1 47 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1390 Lal-Chr23 14551821 14558334 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1390 38 319 MAP Kinase Kinase Kinase AT5G66710 54.417 5.70e-105 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Lal23g1390 PK_Tyr_Ser-Thr 3.6e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1390 - K04427 gmx:106796450 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1390 23 14551821 14558334 Lal23g1390 23 14551821 14558334 ECH