Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1388 AGAACACCTCACTTAAAGAAGCGAGTGTTAAGAAAAAGAAAGTCTAATATACAAGACACTGATATACCCACCACAATGAATCATGTTAATATTGAAGACCATATCATGCTCACGTCTCACCTATACTCTGCAGGTCCATACACTCAAATAGTAGCTCAACAAGGGGAGTACAAGAAGCCAAGACGGAGGCGTATTAAAAAGTGCAGAGGAGGAGAAAGCGGAGGTTTGGACGCACACAAGAAGAGAAAACTGAGTGATGAGCAAGTTAATATGCTTGAACAAAGTTTTGGTAATGAACATAAACTTGAGTCTGAAAGGAAGGACAAGCTTGCAATGGAGCTTGGTTTAGATCCTCGTCAAGTGGCTGTGTGGTTCCAAAACAGGAGAGCTCGTTGGAAGAACAAGAAATTGGAGGAAGAGTACTCCATCCTCAAGAAAGCACATGAAGCCACCACCCTCGAGAAATGCCTTCTTGAAACTGAGGTGTTGAAGCTCAAAGAACAACTATCAGAGGCTGAGAAAGAAATTCTGGTACTAAAGCATACTGACAGGGTCTCTAGCAACAGTCCCAGTTCATCACAGCAGTCTCAGTCAATGGAGGCGGTAGTGGACCCACAATTTTTTGGAGAGTTTCATGTTGATGGATATGATGATGATGTGTTTTACGTGCCGGAGACCCATTACATCAACGGCATGGAATGGATTAATTTGTACATTTGA 720 0.425 RTPHLKKRVLRKRKSNIQDTDIPTTMNHVNIEDHIMLTSHLYSAGPYTQIVAQQGEYKKPRRRRIKKCRGGESGGLDAHKKRKLSDEQVNMLEQSFGNEHKLESERKDKLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYSILKKAHEATTLEKCLLETEVLKLKEQLSEAEKEILVLKHTDRVSSNSPSSSQQSQSMEAVVDPQFFGEFHVDGYDDDVFYVPETHYINGMEWINLYI 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1388 239 CDD homeodomain 80 136 IPR001356 GO:0003677
Lal23g1388 239 Coils Coil 162 182 - -
Lal23g1388 239 Pfam Homeodomain 80 134 IPR001356 GO:0003677
Lal23g1388 239 PRINTS Lambda-repressor HTH signature 106 115 IPR000047 GO:0003677
Lal23g1388 239 PRINTS Lambda-repressor HTH signature 115 131 IPR000047 GO:0003677
Lal23g1388 239 SUPERFAMILY Homeodomain-like 79 144 IPR009057 -
Lal23g1388 239 SMART HOX_1 78 139 IPR001356 GO:0003677
Lal23g1388 239 Coils Coil 127 154 - -
Lal23g1388 239 ProSitePatterns 'Homeobox' domain signature. 110 133 IPR017970 GO:0000981|GO:0006355
Lal23g1388 239 MobiDBLite consensus disorder prediction 54 82 - -
Lal23g1388 239 ProSiteProfiles 'Homeobox' domain profile. 75 135 IPR001356 GO:0003677
Lal23g1388 239 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 32 238 - -
Lal23g1388 239 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 32 238 IPR045224 GO:0003700
Lal23g1388 239 Gene3D - 71 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1388 Lal-Chr23 14522057 14524053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal23g1388 26 239 Homeobox Transcription Factor Family AT4G36740 54.751 3.21e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lal23g1388 Homeodomain 1.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1388 K09338 - gmx:100809616 308.145
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1388 23 14522057 14524053 Lal23g1388 23 14522057 14524053 ECH
Lal16g0184 16 1101153 1102774 Lal23g1388 23 14522057 14524053 LSH
Lal15g0134 15 937842 940377 Lal23g1388 23 14522057 14524053 LSH