Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal23g1377 ATGGGTTGGTTTACTAAGTTGCTTAAGGGCGCCAACCATAAATTTCTACGAGGACAGTACCATGGCAAATATGAAGATAACAGAATTTGGGATAACCATTGCACCTCAGTGGATGATTTGACAGATGTTGAGAAAGAAGACCTAGATCGTGCAATTGCGCTCTCTCTGTCAGAGGAGGACCAGAAAGGGAAAAAAATTGTTGAGGATGACTCTCAATCTGAAGAAGATTTACAGCTTTGCAATATTGAAGAGGAGGAAGATGAACATCTTGGTAAAGTTCAACCAGTGGAAGATGAACATCCTGGCAAAGTTCAACTAGAGGAAGATGAACATATTGGTAAAGTTCAACAAGAGGAAGATAAACATGTTGGTAAAGTTCAACAAGATGAAGATAAACATCTTGCTAAAATTCAACTCGAGGAAGATGAGCAATTGGCCAGGGCAATTCAAGAAAGTTTGAATATCGGTCTTCCTTCTCATTATGACAATGATTCGTTACTTAAACCTAGTCCAAATCTCTTTCCAACTGGATACAGAATCTGTGCTGGATGTAACACTGAGATTGGCCATGGAAGATTTTTAAGTTGCATAGGAGCCATCTGGCATCCGGAATGTTTCCGCTGCCATGCTTGCAATCTTCCAATCACTGAATATGAGTTTTCCATGTCTAGCAGTCGCCCTTACCATAAATCCTGCTATAAGAAGCAGCATCACCCAAGATGTGATGTTTGCAAGAACTTTATCCCAACTAATTCAGCTGGTCTAATTGAGTATAGAGCTCACCCTTTCTGGCTGCAAAAATACTGCCCATCACATGAGCGAGATGGCACTCCTCGCTGTTGTAGCTGTGAAAGAATGGAGCCAAAGGATACAAAATATCTTTTGCTTGATGATGGTCGAAAGCTATGTCTAGAGTGTCTGGACTCTGCAATTATGGATACACATGAATGCCAGCCACTCTACCTTGAGATACAAGAATTTTATGAAGGTTTAAATATGAAAGTTGAGCAGCAAATTCCTATGCTTTTGGTGGAGAGACAAGCACTGAATGAGGCCATGGTGGGAGAAAATAACGGTCATCACCACTTACCTGAAACCAGAGGACTCTGCTTGTCTGAAGAGCAAACTGTCACCACTATTTTAAGGAGACCAAGCATCGGGGCAGGGTACCGGATGGTTGACATGATAACTGAGCCGTACAGGCTGACCCGTCGTTGTGAAGTGACAGCCATTCTTGTTTTGTATGGCCTTCCTAGGATGTTGACAGGATCAATCCTAGCGCACGAAATGATGCATGCATGGCTTAGGCTTAAAGGTTATCATAATCTGAGTCCACAAGTTGAAGAAGGAATCTGCCAAGTATTGGCTCATATGTGGTTAGATTCGGAGATCTATTCTGTACCTGGGAATGATGGTGCACCATCGTCATCTTCATCTTCTTCCTCATCATTGCCTTCTTCTTCCTCTTCGTCATCAAAGAAAGGTAAAAGGTCCGACTTTGATAAAAAACTTGGCGACTTCTTCAAACACCAGATTGAGTCAGATACCTCTTCAGCTTATGGAGATGGATTCAGAATGGGTAACCAGGCAGTGCTCAAATATGGTCTCAAAAGGACACTTGACCATATTCAAATGACAGGAAGTTTCCCTTGA 1653 0.4211 MGWFTKLLKGANHKFLRGQYHGKYEDNRIWDNHCTSVDDLTDVEKEDLDRAIALSLSEEDQKGKKIVEDDSQSEEDLQLCNIEEEEDEHLGKVQPVEDEHPGKVQLEEDEHIGKVQQEEDKHVGKVQQDEDKHLAKIQLEEDEQLARAIQESLNIGLPSHYDNDSLLKPSPNLFPTGYRICAGCNTEIGHGRFLSCIGAIWHPECFRCHACNLPITEYEFSMSSSRPYHKSCYKKQHHPRCDVCKNFIPTNSAGLIEYRAHPFWLQKYCPSHERDGTPRCCSCERMEPKDTKYLLLDDGRKLCLECLDSAIMDTHECQPLYLEIQEFYEGLNMKVEQQIPMLLVERQALNEAMVGENNGHHHLPETRGLCLSEEQTVTTILRRPSIGAGYRMVDMITEPYRLTRRCEVTAILVLYGLPRMLTGSILAHEMMHAWLRLKGYHNLSPQVEEGICQVLAHMWLDSEIYSVPGNDGAPSSSSSSSSSLPSSSSSSSKKGKRSDFDKKLGDFFKHQIESDTSSAYGDGFRMGNQAVLKYGLKRTLDHIQMTGSFP 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal23g1377 550 MobiDBLite consensus disorder prediction 470 498 - -
Lal23g1377 550 ProSitePatterns LIM zinc-binding domain signature. 181 215 IPR001781 -
Lal23g1377 550 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 140 153 IPR003903 -
Lal23g1377 550 ProSiteProfiles LIM domain profile. 179 239 IPR001781 -
Lal23g1377 550 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 207 262 - -
Lal23g1377 550 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 173 206 - -
Lal23g1377 550 CDD LIM_DA1 181 233 - -
Lal23g1377 550 Pfam Protein DA1 330 546 IPR022087 -
Lal23g1377 550 SMART uim 140 159 IPR003903 -
Lal23g1377 550 SMART uim 43 62 IPR003903 -
Lal23g1377 550 SMART lim_4 180 232 IPR001781 -
Lal23g1377 550 Pfam LIM domain 181 236 IPR001781 -
Lal23g1377 550 Gene3D Cysteine Rich Protein 174 239 - -
Lal23g1377 550 PANTHER PROTEIN DA1-RELATED 2 107 550 IPR045218 -
Lal23g1377 550 PANTHER PROTEIN DA1-RELATED 2 1 120 IPR045218 -
Lal23g1377 550 MobiDBLite consensus disorder prediction 470 493 - -
Lal23g1377 550 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 1 120 - -
Lal23g1377 550 PANTHER TRANSCRIPTION FACTOR INTERACTOR AND REGULATOR LIM FAMILY-RELATED 107 550 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal23g1377 Lal-Chr23 14461309 14466923 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lal23g1377 DA1-like 2.2e-103 CL0126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal23g1377 - - gmx:100817969 911.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal23g1377 23 14461309 14466923 Lal23g1377 23 14461309 14466923 ECH
Lal23g1377 23 14461309 14466923 Lal16g1506 16 11996199 12002660 PCT
Lal16g1506 16 11996199 12002660 Lal23g1377 23 14461309 14466923 PCT